Locus 5277

Sequence ID 2L_DroMel_CAF1
Location 14,881,952 – 14,882,056
Length 104
Max. P 0.742574
window8396

overview

Window 6

Location 14,881,952 – 14,882,056
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.01
Mean single sequence MFE -25.32
Consensus MFE -16.27
Energy contribution -15.66
Covariance contribution -0.61
Combinations/Pair 1.22
Mean z-score -1.39
Structure conservation index 0.64
SVM decision value 0.45
SVM RNA-class probability 0.742574
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14881952 104 + 22407834
GGAAAUGGUAAACUGAUUUCUCUUAUUAAUUUCAGUUGGCAAUUUGUGCAGAUAAAUCAGCGCAGUUGUUAGUGCCACAUUGGCAUUUCGUUCCAUCCUUCGUU----------------
(((..(((..((((((...............))))))(((((((.((((.((....)).)))))))))))((((((.....)))))).....))))))......---------------- ( -25.36)
>DroPse_CAF1 92213 109 + 1
GGAAAUGGUAAACUGAUUUCUCUUAUUAAUUUCAGUUGGCAAUUUGUGCAGAUAAAUCAGCACAGUUGUCCG----GCUCUGGGUCUCCCUUUCA-------CUGUACCCCCAAAAACCC
((....((((...(((.................(((((((((((.((((.((....)).))))))))).)))----)))..(((...)))..)))-------...)))).))........ ( -24.80)
>DroSim_CAF1 39736 104 + 1
GGAAAUGGUAAACUGAUUUCUCUUAUUAAUUUCAGUUGGCAAUUUGUGCAGAUAAAUCAGCGCAGUUGUUAGUGCCACAUUGGCAUUUCGUUCCAACCCUCGUU----------------
((((.(((..((((((...............))))))(((((((.((((.((....)).)))))))))))((((((.....)))))))))))))..........---------------- ( -25.26)
>DroYak_CAF1 39510 104 + 1
GGAAAUGGUAAACUGAUUUCUCUUAUUAAUUUCAGUUGGCAAUUUGUGCAGAUAAAUCAGCGCAGUUGUUAGUGCCACAUUGGCAUUUCGCUCCAUCCCUGUUU----------------
(((..(((..((((((...............))))))(((((((.((((.((....)).)))))))))))((((((.....)))))).....))))))......---------------- ( -24.96)
>DroAna_CAF1 42640 115 + 1
GGAAAUGGUAAACUGAUUUCUCUUAUUAAUUUCAGUUGGCAAUUUGUGCAGAUAAAUCAGUGUAGUUGUUGCUGCCACAUUGCUAUUUGCUUCGCCCUUUCCUUACAUUUU-----UCGC
(((((.(((.((((((...............))))))((((((.((.((((...((.(((.....))))).)))))).)))))).........))).))))).........-----.... ( -26.76)
>DroPer_CAF1 74693 109 + 1
GGAAAUGGUAAACUGAUUUCUCUUAUUAAUUUCAGUUGGCAAUUUGUGCAGAUAAAUCAGCACAGUUGUCCG----GCUCUGGGUCUCCCUUUCA-------CUGUACCCCCAAAAACCC
((....((((...(((.................(((((((((((.((((.((....)).))))))))).)))----)))..(((...)))..)))-------...)))).))........ ( -24.80)
>consensus
GGAAAUGGUAAACUGAUUUCUCUUAUUAAUUUCAGUUGGCAAUUUGUGCAGAUAAAUCAGCGCAGUUGUUAGUGCCACAUUGGCAUUUCCUUCCA_CC_UC_UU________________
((((......((((((...............))))))(((((((.((((.((....)).)))))))))))....................)))).......................... (-16.27 = -15.66 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:21 2006