| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,870,651 – 14,870,751 |
| Length | 100 |
| Max. P | 0.620599 |
| Location | 14,870,651 – 14,870,751 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.14 |
| Mean single sequence MFE | -36.15 |
| Consensus MFE | -20.02 |
| Energy contribution | -19.05 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620599 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14870651 100 + 22407834 --GAGUUGUGAACCACAGGC--------GUCGAAAAGGGGC----UGCUCUCCAUGGC-GAAAGAGAUAGGGGCAGGGA-----UGAAGUGCUGUCAGGACAGACGGCAUCGUAACCGGA --..........((...(((--------.((.....)).))----)(((((..((..(-....)..)).)))))..((.-----((..((((((((......))))))))..)).)))). ( -30.10) >DroSec_CAF1 30828 100 + 1 --GAGUUGUGACCCAGAGGC--------GCCGAAAGGGGGC----UGCUUUCCAUGGG-GAAAGAGAUAGGGGCAGGGA-----UGGAGUGCUGUCAGGACGGACGGCAUCGUAACCGGA --...((((..(((..((.(--------.((....)).).)----).((((((....)-))))).....)))))))((.-----((..((((((((......))))))))..)).))... ( -36.70) >DroSim_CAF1 30429 99 + 1 --GAAUUGUGACCCAGAGGC--------GCCGAAAAGGGGC----UGCUUUCCAUGG--GAAAGAGAUAGGGGCAGGGA-----UGGGGUGCUGUCAGGACGGACGGCAUCGUAACCGGA --...((((..(((...(((--------.((.....)).))----).((((((...)--))))).....)))))))((.-----((.(((((((((......))))))))).)).))... ( -37.60) >DroEre_CAF1 30325 110 + 1 --GAAUUGUGACCCAGAGGC--------GUCGAAAAGGGGCAGUCUGCUUUCCAUUGGGCCAAGAGAUAGGGCCAGGGAUGGGAUGGAGUGCUGUCAGGACAGACGGCAUCGUAACCGGA --.........((((((.((--------.((.....)).))..))))...(((.((((.((........)).)))))))..((.((..((((((((......))))))))..)).)))). ( -35.20) >DroYak_CAF1 30163 101 + 1 --GAAUUGUGACCCAGAGGC--------GCCGAAAAGGGGUGG--UGCCUUCCAUGGG-GUAAGAGAUAGGGGCAGGGG------GUAGUGCUGUCGGGACAGACGGCAUCGUAACCGGA --.........(((((((((--------((((........)))--))))))...))))-................((..------(..((((((((......))))))))..)..))... ( -37.70) >DroAna_CAF1 29118 102 + 1 GGGAUUCGGGGCUUGGGGACGGUGCAGGGCUGGUGCGGGGCAG--UGGCUUCCAUGC----------UCAGGGUAUGG------UAGUGGGCUGUCGGGACAGACGGCUUCGAAGCCGGA .((.(((((((((((..((((((.((((((((.(((...))).--))))))((((((----------.....))))))------...)).))))))....))...))))))))).))... ( -39.60) >consensus __GAAUUGUGACCCAGAGGC________GCCGAAAAGGGGC____UGCUUUCCAUGGG_GAAAGAGAUAGGGGCAGGGA_____UGGAGUGCUGUCAGGACAGACGGCAUCGUAACCGGA .....((.((.(((...(((........))).....(((((.....)))..))................))).)).))..........((((((((......)))))))).......... (-20.02 = -19.05 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:17 2006