| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,869,904 – 14,869,998 |
| Length | 94 |
| Max. P | 0.861313 |
| Location | 14,869,904 – 14,869,998 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 68.36 |
| Mean single sequence MFE | -16.24 |
| Consensus MFE | -3.21 |
| Energy contribution | -3.14 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.64 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.20 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14869904 94 + 22407834 AAGAGCAAAAA-CGA-AAGGGGUGCAAAAAAUUCUUAGAAGGA--AGUAAACUUGCGAAAAAGUAACU--CAAUAAACAAAGAGUGUAAAUACUCUAACU ..(((......-(..-..)...(((((....((((.....)))--)......))))).........))--).........((((((....)))))).... ( -14.00) >DroSec_CAF1 29729 94 + 1 AAGAGCAAAAA-CGA-AAGAGGUGCAAAAAAACCUUAAAAGGA--AGUAAGCUUGCGAAAAAGUAACU--CAAUAAACAAAGAGUUUAAAUACUCUAAUU ..(((......-...-..(((((........)))))....(.(--((....))).)..........))--).........(((((......))))).... ( -15.10) >DroSim_CAF1 29282 94 + 1 AAGAGCAAAAA-CGA-AAGGGGUGCAAAAAAUCCUCAGAAGGA--AGUAAGCUUUCGAAAAAGUAACU--CAAUAAACAAAGAGUGUAAAUACUCUAAUU ..(((......-(..-..)((((.......))))......(((--((....)))))..........))--).........((((((....)))))).... ( -15.90) >DroEre_CAF1 29137 96 + 1 AAGUGCAAAAA-CGA-AAGGGGUGCAAGAAAUGCUUAGAAGGA--AAUAAAAUUGCUUAAAUGUAACCAGCAGCAGUUAGGGGUUAAAAAUACUCUAGCU ...(((.....-(..-..).((((((.....))).........--........(((......)))))).)))..((((((((..........)))))))) ( -17.70) >DroAna_CAF1 28442 88 + 1 AGGAACUCAAAGUGCAAUGAAGGG--AAAAAACUUCGCAAGGAACAGUAUCCUUUCGGGCUAGGUUAU--UAGUAUGCAAGAA-AAUAGGUA---U---- ............((((.(((((((--(......(((....)))......)))))))).(((((....)--)))).))))....-........---.---- ( -18.50) >consensus AAGAGCAAAAA_CGA_AAGGGGUGCAAAAAAUCCUUAGAAGGA__AGUAAACUUGCGAAAAAGUAACU__CAAUAAACAAAGAGUAUAAAUACUCUAACU ..................((((..........))))..............((((......))))................((((((....)))))).... ( -3.21 = -3.14 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:16 2006