Locus 5271

Sequence ID 2L_DroMel_CAF1
Location 14,865,678 – 14,865,778
Length 100
Max. P 0.823151
window8388

overview

Window 8

Location 14,865,678 – 14,865,778
Length 100
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 89.08
Mean single sequence MFE -16.73
Consensus MFE -13.90
Energy contribution -13.53
Covariance contribution -0.37
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.83
SVM decision value 0.69
SVM RNA-class probability 0.823151
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14865678 100 - 22407834
AGUGAAAAAAAAACA-AAACAAAAAAAACCGAGCGAAAGAAACAAACAUUGAAUACAAAUGUAUUCUCGCCUUGUUGGCUGCAAAGUCAGGAAACGUUAUA
.((((..........-.................(....)...........((((((....)))))))))).((.((((((....)))))).))........ ( -15.60)
>DroSec_CAF1 25543 92 - 1
UGUGAAAAAAAAAUA---------UAAACCGAGCGAAAGAAACAAACAUUGAAUACAAAUGUAUUCUCGCCUUGUUGGUUGCAAAGUCAGGAAACGUUAUA
.............((---------(((.....((((....(((((.....((((((....)))))).....)))))..)))).......(....).))))) ( -15.50)
>DroSim_CAF1 25062 92 - 1
UGUGAAAAAAAAAUA---------UAAACCGAGCGAAAGAAACAAACAUUGAAUACAAAUGUAUUCUCGCCUUGUUGGCUGCAAAGUCAGGAAACGUUAUA
.((((..........---------.........(....)...........((((((....)))))))))).((.((((((....)))))).))........ ( -15.40)
>DroYak_CAF1 24673 101 - 1
UGUGAAAAAAAAAGAUGGAGAAAAAAGAGCGGGCGAAAGAAACAAACAUUGAAUACAAAUGUAUUUUCGCCUUGUUGGCUGCAAAGUCAGGAAACGUUAUA
...........................((((((((((((......(((((.......))))).))))))))((.((((((....)))))).)).))))... ( -20.40)
>consensus
UGUGAAAAAAAAAUA_________AAAACCGAGCGAAAGAAACAAACAUUGAAUACAAAUGUAUUCUCGCCUUGUUGGCUGCAAAGUCAGGAAACGUUAUA
.((((............................(....)...........((((((....)))))))))).((.((((((....)))))).))........ (-13.90 = -13.53 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:14 2006