Locus 5269

Sequence ID 2L_DroMel_CAF1
Location 14,864,937 – 14,865,032
Length 95
Max. P 0.563421
window8385

overview

Window 5

Location 14,864,937 – 14,865,032
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 89.48
Mean single sequence MFE -23.04
Consensus MFE -16.96
Energy contribution -16.76
Covariance contribution -0.20
Combinations/Pair 1.11
Mean z-score -1.66
Structure conservation index 0.74
SVM decision value 0.06
SVM RNA-class probability 0.563421
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14864937 95 - 22407834
GAUUGCCUGACCAAAUAGCCAUAUAAUGCUGAACUAUUUUGCAUUGUGUGAUCAAUGCCAAUUGAAUUCUCUGGAAUGUUUCAGUAGGCAUUUUG
...((((((...(((((..((((((((((...........)))))))))).(((((....)))))...........)))))...))))))..... ( -24.20)
>DroSec_CAF1 24817 95 - 1
GAUUGCCUGUCCAAAUAGCCAUAUAAUGCUGAACUAUUUUGCAUUGUGCGAUCAAUGCGAAUUGAAUUCUCUGGAAUGUUUCGGUAGGCAUUUUG
...((((((.(((((((.(((((((((((...........))))))))...(((((....)))))......)))..))))).))))))))..... ( -24.70)
>DroSim_CAF1 24306 95 - 1
GAUUGCCUGUCCAAAUAGCCAUAUAAUGCUGAACUAUUUUGCAUUGUGCGAUCAAUGCGAAUUGAAUUCUCUGGAAUGUUUCGGUAGGCAUUUUG
...((((((.(((((((.(((((((((((...........))))))))...(((((....)))))......)))..))))).))))))))..... ( -24.70)
>DroEre_CAF1 24214 86 - 1
GAUUGCCUGGCCAAAUAGCCAUAUUAUGCUGAACUAUUUUGCAUUGUGC---------GCAUUGAAUUCUCUGGAAUGUUUCAGCAGGCAUUUUG
...((((((((......)))).....(((((((.((((((((.....))---------.....((....)).)))))).)))))))))))..... ( -22.80)
>DroYak_CAF1 23925 86 - 1
AAUUGCCUGGCCAAAUAGCAAUAUAAUGCUGAACUAUUUUGCAUUGUGC---------GUAUUGAAUUCUCUGGAAUGUUUCAGUAGGCAUUUUG
.(((((.((......)))))))(((((((...........)))))))((---------.((((((((((....))))...)))))).))...... ( -18.80)
>consensus
GAUUGCCUGGCCAAAUAGCCAUAUAAUGCUGAACUAUUUUGCAUUGUGCGAUCAAUGCGAAUUGAAUUCUCUGGAAUGUUUCAGUAGGCAUUUUG
...((((((............((((((((...........))))))))......................(((((....)))))))))))..... (-16.96 = -16.76 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:11 2006