| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,863,654 – 14,863,754 |
| Length | 100 |
| Max. P | 0.629969 |
| Location | 14,863,654 – 14,863,754 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -16.09 |
| Energy contribution | -15.54 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14863654 100 + 22407834 ---CUCCUGUUUCCUUAUUUCAGAGCAU---------ACAUAUGCAUACAAUACGACUUGAUGAAGUUUAUUAGCUUUGUGGC-AAAUGAGUGUCAUUUAGAGAUAAGGACGA ---........((((((((((...((((---------....))))..............(((((..((((((.(((....)))-.))))))..)))))..))))))))))... ( -26.60) >DroSec_CAF1 23584 100 + 1 ---CUCCUGUUUCCUUAUUUCAAAGCAU---------ACAUAUGCAUACGCUACGACUUGAUGAAGUUUAUUAGCUUUGUGGC-AAAUGAGUGUCAUUUAGAGGUAAGGACGA ---........((((((((((...((((---------....))))....(((((((.(((((((...)))))))..)))))))-(((((.....))))).))))))))))... ( -27.20) >DroSim_CAF1 23097 100 + 1 ---CUCCUGUUUCCUUAUUUCAGAGCAU---------ACAUAUGCAUACGCUACGACUUGAUGAAGUUUAUUAGCUUUGUGGC-AAAUGAGUGUCAUUUAGAGAUAAGGACGA ---........((((((((((...((((---------....))))....(((((((.(((((((...)))))))..)))))))-(((((.....))))).))))))))))... ( -27.70) >DroEre_CAF1 22874 100 + 1 ---CUCCUGUUUUCUUAUUUCAGACCAU---------ACAUAUGCAUACGCUACGACUUGAUGAAGUUUAUUAGCUUUGUGGC-AAAUGAGUGUCAACUAGAGAUAAGGACGA ---........((((((((((((..(((---------.(((.(((.(((((((.(((((....)))))...))))...)))))-).))).)))....)).))))))))))... ( -22.10) >DroYak_CAF1 22665 100 + 1 ---CUCCAGUUUCCUUAUUUCAGACCGU---------UCAUAUGCAUACGCUGCGACUUGAUGAAGUUUAUUAGCUUUGUGGC-AAAUGAGUGUCAUUUCGAGAUAAGGACGA ---........((((((((((.......---------......(((.....)))((...(((((..((((((.(((....)))-.))))))..)))))))))))))))))... ( -25.60) >DroAna_CAF1 21223 113 + 1 UGCCCCAUGCUCGUUUAUUUCGAAGGAUAUGUCCUAUAUGUGUGUAUUUGCUUCGAUGGAAUAAAGUUUAUUAGCUUUGUUCUGGAAGGAGUGCGACCGGAAGAUAAGUUGGA ....(((.(((..((..(((((.((((....)))).......(((((((.((((...(((((((((((....))))))))))).)))))))))))..)))))))..)))))). ( -30.40) >consensus ___CUCCUGUUUCCUUAUUUCAGAGCAU_________ACAUAUGCAUACGCUACGACUUGAUGAAGUUUAUUAGCUUUGUGGC_AAAUGAGUGUCAUUUAGAGAUAAGGACGA ...........((((((((((...((((.............))))..(((((......(.((((((((....)))))))).).......)))))......))))))))))... (-16.09 = -15.54 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:10 2006