Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,861,338 – 14,861,440 |
Length | 102 |
Max. P | 0.795315 |
Location | 14,861,338 – 14,861,440 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 77.70 |
Mean single sequence MFE | -16.69 |
Consensus MFE | -9.95 |
Energy contribution | -9.75 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.20 |
Mean z-score | -1.76 |
Structure conservation index | 0.60 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14861338 102 + 22407834 AGAAGCACCCACGAACACACAGCCACCCCCACACACCCACAUACACGUUGAUCAUACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA .((((((.....(......).(((....................((((((........)))))).((((...............)))))))....)))))). ( -19.56) >DroPse_CAF1 52084 99 + 1 ACACGCACCCAGCACCAU---UCCACCCACAAGCAGACACACAUACGUUGAUCAUACGCAGUGUUGUGCUUACAAAUUUCAAAUGCAUGGCACUUUAGUGCA ....((((((((((....---.........(((((.(.((((...(((.......)))..))))).)))))............))).))).......)))). ( -18.62) >DroSec_CAF1 21272 92 + 1 AGAAACACCCACAAACACACAGCCACC--CA--------CAUACACGUUGAUCAUACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA .....................(((...--..--------.....((((((........)))))).((((...............)))))))........... ( -13.46) >DroSim_CAF1 20787 100 + 1 AGAAGCACCCACGAACACACAGCCACC--CACACAGCCACAUACACGUUGAUCAUACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA .((((((.....(......).......--......(((......((((((........)))))).((((...............)))))))....)))))). ( -19.56) >DroEre_CAF1 20491 77 + 1 -----CACACA------CACACCCA--------------CACACACGUUGAUCAUACGCAGUGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA -----......------........--------------..................(((((((..(((...............)))..))))..))).... ( -13.56) >DroYak_CAF1 20351 81 + 1 AGAAGCACCCA------CACAGCCA--------------CACACACCCACA-CACACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA .((((((....------....((..--------------............-.....))((.((..(((...............)))..)).)).)))))). ( -15.37) >consensus AGAAGCACCCAC_AACACACAGCCACC__CA________CACACACGUUGAUCAUACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA .........................................................(.((((..(((((..................)))))..)))).). ( -9.95 = -9.75 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:08 2006