Locus 5265

Sequence ID 2L_DroMel_CAF1
Location 14,856,278 – 14,856,371
Length 93
Max. P 0.532494
window8380

overview

Window 0

Location 14,856,278 – 14,856,371
Length 93
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 87.50
Mean single sequence MFE -19.63
Consensus MFE -18.74
Energy contribution -18.66
Covariance contribution -0.08
Combinations/Pair 1.11
Mean z-score -1.24
Structure conservation index 0.95
SVM decision value -0.00
SVM RNA-class probability 0.532494
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14856278 93 + 22407834
AAAAGGAUUUCCAGAUUAAGUAUGUGGGAGAGUGGUACACUAUGUUUCAGCAACAUAAGAAUCUUUCAAAUCUUUUU-AAAUAAAGUCAAGGC------------U
((((((((((..(((((...(((((.((((.((((....)))).))))....)))))..)))))...))))))))))-......(((....))------------) ( -20.10)
>DroSec_CAF1 16356 93 + 1
AAAAGGAUUUCCAGAUUAAGUAUGUGGGAGGGUGGUACACUAUGUUUCAGCAACAUAAGAAUCUUUCAAAUCUUUUU-AAAUAAAGUCAAAGC------------U
((((((((((..(((((...(((((.((((.((((....)))).))))....)))))..)))))...))))))))))-...............------------. ( -21.70)
>DroSim_CAF1 15803 93 + 1
AAAAGGAUUUCCAGAUUAAGUAUGUGGGAGAGUGGUACACUAUGUUUCAGCAACAUAAGAAUCUUUCAAAUAUUUUU-AAAUAAAGUCAAAGC------------U
.....(((((.......((((((.((..((((((...)))((((((.....))))))....)))..)).))))))..-.....))))).....------------. ( -15.64)
>DroEre_CAF1 14924 105 + 1
AAAAGGAUUUCCAGAUUAAGUAUGUGGGCGAGUGGUACACUAUGUUUCAGGAACAUAAGAGUCUUUCAAAUCCUUUU-AAAUAAAGUCAAGUGCAAGGGGCCACGU
((((((((((..(((((...(((((.((...((((....))))...))....)))))..)))))...))))))))))-............((((.....).))).. ( -21.40)
>DroYak_CAF1 15372 99 + 1
AAAAGGAUUUCCAGAUUAAGUAUGUGGGAGAGUGGUACACUAUGUUUCAGCAGCAUAAGAAUCUUUCAAAUCUUUUUCAAAUGAAAUCAAGAACAAAGG-------
((((((((((..(((((...(((((.((((.((((....)))).))))....)))))..)))))...))))))))))......................------- ( -19.30)
>consensus
AAAAGGAUUUCCAGAUUAAGUAUGUGGGAGAGUGGUACACUAUGUUUCAGCAACAUAAGAAUCUUUCAAAUCUUUUU_AAAUAAAGUCAAGGC____________U
((((((((((..(((((...(((((.((((.((((....)))).))))....)))))..)))))...))))))))))............................. (-18.74 = -18.66 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:05 2006