Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,852,025 – 14,852,130 |
Length | 105 |
Max. P | 0.999900 |
Location | 14,852,025 – 14,852,130 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 97.02 |
Mean single sequence MFE | -36.18 |
Consensus MFE | -34.08 |
Energy contribution | -33.97 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -2.85 |
Structure conservation index | 0.94 |
SVM decision value | 4.45 |
SVM RNA-class probability | 0.999900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14852025 105 - 22407834 UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA .........(((((((((((((((((.(((......))).)))))(((.(((.((....((....))((....)))).)))..))).....))).))))))))). ( -36.60) >DroSec_CAF1 12168 105 - 1 UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA .........(((((((((((((((((.(((......))).)))))(((.(((.((....((....))((....)))).)))..))).....))).))))))))). ( -36.60) >DroSim_CAF1 11508 105 - 1 UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA .........(((((((((((((((((.(((......))).)))))(((.(((.((....((....))((....)))).)))..))).....))).))))))))). ( -36.60) >DroEre_CAF1 10786 105 - 1 UUCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUUCUUUUGCAUAUUGCACUGCAGCUGA .........(((((((((((((((((.(((......))).)))))(((.(((......(((....)))(((....))).))).))).....))).))))))))). ( -35.40) >DroYak_CAF1 11196 105 - 1 UUCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUGCGAAAUUUCGGACCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA .........(((((((((((((((((.(((......))).)))))...........(((((((...(((....))).....)))))))...))).))))))))). ( -36.10) >DroAna_CAF1 10652 104 - 1 UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACA-UGGACGUUUUCAAAAUUUCGGGCCACCGCCUCCUUUUCCAUAUUGCACUGCAGCUGA .........(((((((((((((((((.(((......))).))))).(-((((((............))(((....)))......)))))..))).))))))))). ( -35.80) >consensus UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA .........(((((((((((((((((.(((......))).)))))....(((.((....((....))((....)))).)))..........))).))))))))). (-34.08 = -33.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:04 2006