Locus 5263

Sequence ID 2L_DroMel_CAF1
Location 14,848,205 – 14,848,299
Length 94
Max. P 0.528187
window8378

overview

Window 8

Location 14,848,205 – 14,848,299
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 90.56
Mean single sequence MFE -14.48
Consensus MFE -13.65
Energy contribution -13.65
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.98
Structure conservation index 0.94
SVM decision value -0.01
SVM RNA-class probability 0.528187
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14848205 94 - 22407834
AUUCCAAGACCAAGACCAAGAUGAUGACGACACACAAAAACGAAGCGA-AACUUGAUAAAAACUUUUAUCAUAACAAUUUGUGUUGUUUUGCUUA
..........................................((((((-(((.(((((((....))))))).((((.....))))))))))))). ( -14.30)
>DroSec_CAF1 8421 94 - 1
AUUCCAAGACCAAGACCAAGAUGAUGACGACACACAAAAACGAAGCGA-AACUUGAUAAAAACUUUUAUCAUAACAAUUUGUGUUGUUUUGCUUA
..........................................((((((-(((.(((((((....))))))).((((.....))))))))))))). ( -14.30)
>DroSim_CAF1 7781 94 - 1
AUUCCAAGACCAAGACCAAGAUGAUGACGACACACAAAAACGAAGCGA-AACUUGAUAAAAACUUUUAUCAUAACAAUUUGUGUUGUUUUGCUUA
..........................................((((((-(((.(((((((....))))))).((((.....))))))))))))). ( -14.30)
>DroEre_CAF1 7021 94 - 1
AUUCCAGGACCAAGACCAAGAUGAUGACGACACACAAAAACGAAGCGA-AACUUGAUAAAAACUUUUAUCAUAACAAUUUGUGUUGUUUUGCUUA
......((.......)).........................((((((-(((.(((((((....))))))).((((.....))))))))))))). ( -14.70)
>DroYak_CAF1 7322 82 - 1
AUUUC------------AAGAUGAUGACGACACACAAAAACGAAGCGA-AACUUGAUAAAAACUUUUAUCAUAACAAUUUGUGUUGUUUUGCUUA
.....------------.........................((((((-(((.(((((((....))))))).((((.....))))))))))))). ( -14.30)
>DroAna_CAF1 7151 84 - 1
-----------GAGGCCAAGACGAUGACGACACACAAAAACGAAACGAAAACUUGAUAAAAACUUUUAUCAUAACAAUUUGUGUUGUUUUGCUUA
-----------......(((.(((.(((((((((......((...))......(((((((....)))))))........))))))))))))))). ( -15.00)
>consensus
AUUCCAAGACCAAGACCAAGAUGAUGACGACACACAAAAACGAAGCGA_AACUUGAUAAAAACUUUUAUCAUAACAAUUUGUGUUGUUUUGCUUA
.................(((.....(((((((((......((...))......(((((((....)))))))........)))))))))...))). (-13.65 = -13.65 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:03 2006