Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,838,924 – 14,839,020 |
Length | 96 |
Max. P | 0.521099 |
Location | 14,838,924 – 14,839,020 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 74.19 |
Mean single sequence MFE | -12.97 |
Consensus MFE | -5.88 |
Energy contribution | -6.12 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.33 |
Mean z-score | -2.14 |
Structure conservation index | 0.45 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14838924 96 - 22407834 -----UUUUUUCCCCAUCCUAUAAUUUGGGAAAUGAUACUCUUUUUUGUGGUCAGAUUAGAUCCUAUCACUACUACAUUAAUUUUUUUCUUUUUAACGGUA -----........((.(((((.....)))))..(((((.(((..((((....))))..)))...)))))............................)).. ( -13.20) >DroSec_CAF1 80768 90 - 1 -----CCUUUCCCCCAUCCUAUAAUUUGGGAAAUUAUACUCUUUUUUGUGGUCAGAUUAGACCCUAUCACUACCAC------UUUUUUCUUUUUAACGGUA -----........((.(((((.....)))))................(((((..(((........)))...)))))------...............)).. ( -13.20) >DroSim_CAF1 81975 90 - 1 -----CCUUUCCCCCAUCCUAUAAUUUGGGAAAUUAUACUCUUUUUUGUGGUCAGAUUAGACCCUAUCACUACUAC------UUUUUUCUUUUUAACGGUA -----........((.(((((.....)))))..................((((......)))).............------...............)).. ( -11.30) >DroEre_CAF1 76135 92 - 1 UUUUACCUUUACCCCAUUCAACAACUUUAGGGACUAUACCCUUUUUCACUGUC---------CCUAAGACAACUUUACCAGUAUUUUUCUUUUUAGCGGUA ...((((..................(((((((((................)))---------))))))...(((.....)))...............)))) ( -14.19) >consensus _____CCUUUCCCCCAUCCUAUAAUUUGGGAAAUUAUACUCUUUUUUGUGGUCAGAUUAGACCCUAUCACUACUAC______UUUUUUCUUUUUAACGGUA .............((.(((((.....)))))................(((((..(((........)))...))))).....................)).. ( -5.88 = -6.12 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:01 2006