Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,837,839 – 14,837,930 |
Length | 91 |
Max. P | 0.633679 |
Location | 14,837,839 – 14,837,930 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 79.67 |
Mean single sequence MFE | -23.14 |
Consensus MFE | -11.26 |
Energy contribution | -12.57 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.22 |
Mean z-score | -2.24 |
Structure conservation index | 0.49 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14837839 91 - 22407834 AAAUGCAUCUGUCUUGCCCAAAAACCCGCAGACAUGCAGGGAAAAGGGAGAUUCAGGAUCCCAAAA------CUAAUCACCAAUUAGGGAUGGCAUA ..((((.((((..(..(((.....((((((....))).)))....)))..)..))))(((((....------..............))))).)))). ( -24.97) >DroSec_CAF1 79690 91 - 1 AAAUGCAUCUGUCUUGCCCAAAAACCCGCAGACAUGCAGGGAAAAGGGAGAUGCAGGAUCCAAAAA------CUAAUCACCAAUUAGGGAUGGCAUA ..(((((((((((((((((.....((((((....))).))).....))....))))))).......------(((((.....))))))))).)))). ( -25.10) >DroSim_CAF1 80896 91 - 1 AAAUGCAUCUGACUUGCCCAAAAACCCGCAGACAUGCAGGGAAAAGGGAGAUGCAGUAUCCAAAAA------CUAAUCACCAAUUAGGGAUGGCAUA ...(((((((......(((.....((((((....))).)))....))))))))))((((((.....------(((((.....))))))))).))... ( -23.20) >DroEre_CAF1 74960 89 - 1 AAAUGCAUCUGAGUUGGCCAAAAACCCGCAGACAUGCGGG-GAAAGGGUGAUUCGGGAUCCGAAA-------CUAAUCACCAAUUAGGGAUGGCAUA ..((((.(((((((((.((.....((((((....))))))-....)).)))))))))((((....-------(((((.....))))))))).)))). ( -31.50) >DroYak_CAF1 77050 96 - 1 AAAUGCAUCUGUCUUGCCCAAAAACCCGCAGACAUGCUGG-AAAAGGGAGAUUCGGGAUCCAAAAACUACGAGUAAUCACCUAUUAGCGAUGGCAUA ..((((((((((((.((..........))))))).(((((-...(((((.(((((..............)))))..)).))).)))))))).)))). ( -21.94) >DroAna_CAF1 74279 75 - 1 AAACGAAUUUGUCUUGGCCGC--ACCCGAAUA------GG-AAAA----GACACAGGAUC-AGAAA------CUAAUCGUUACUUAGAUAUGGUA-- .(((((...((((((..((..--.........------))-..))----)))).((....-.....------))..)))))..............-- ( -12.10) >consensus AAAUGCAUCUGUCUUGCCCAAAAACCCGCAGACAUGCAGG_AAAAGGGAGAUUCAGGAUCCAAAAA______CUAAUCACCAAUUAGGGAUGGCAUA ..((((.((((..((.(((.....((.(((....))).)).....))).))..))))..................(((.((.....))))).)))). (-11.26 = -12.57 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:00 2006