Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,834,072 – 14,834,167 |
Length | 95 |
Max. P | 0.781775 |
Location | 14,834,072 – 14,834,167 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 94.18 |
Mean single sequence MFE | -26.98 |
Consensus MFE | -22.98 |
Energy contribution | -23.65 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.85 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14834072 95 + 22407834 ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAGGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC .........((((.(..((((((((((((.......))))))))........(....)..))))..).))))...(((.((((....)))).))) ( -28.50) >DroSec_CAF1 75996 89 + 1 ACACACA-AUGGAAU--AUCCGUGCGUC-UGCAA--CGAUGCAUGACAGACAGGAGACGAAGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC .......-((((...--..))))(((((-((((.--...)))).))).....((((.((.....)).)))).)).(((.((((....)))).))) ( -24.90) >DroSim_CAF1 77111 95 + 1 ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAAGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC .........((((.(..((((((((((((.......))))))))).......(....)...)))..).))))...(((.((((....)))).))) ( -26.60) >DroEre_CAF1 71391 95 + 1 ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAGGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC .........((((.(..((((((((((((.......))))))))........(....)..))))..).))))...(((.((((....)))).))) ( -28.50) >DroYak_CAF1 73367 95 + 1 ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAGGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC .........((((.(..((((((((((((.......))))))))........(....)..))))..).))))...(((.((((....)))).))) ( -28.50) >DroAna_CAF1 70614 95 + 1 ACACACAAAUAGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGUCGAGGUGGAGCUGCAGCCGCUAACUUCAAGAAGUAAGC ...(((..............(((((((((.......)))))))))...(((....)))...)))(.((....)))(((.((((....)))).))) ( -24.90) >consensus ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAGGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC ........(((((.....)))))(((((.((((......)))).))).....((((.((.....)).)))).)).(((.((((....)))).))) (-22.98 = -23.65 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:59 2006