Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,826,116 – 14,826,211 |
Length | 95 |
Max. P | 0.779665 |
Location | 14,826,116 – 14,826,211 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 73.76 |
Mean single sequence MFE | -25.16 |
Consensus MFE | -9.87 |
Energy contribution | -10.95 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.88 |
Structure conservation index | 0.39 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14826116 95 + 22407834 CCAUUCUGUAAGCCAUGGCUACUGCUGGUAUCACU----------GAUUG------AAAAGAGUGAGCAAAAACGGAGUGAAGUGGAGAAAACUCUACUCAAACUCGACUC .((((((((..((((..((....)))))).(((((----------.....------.....)))))......)))))))).(((((((....)))))))............ ( -25.30) >DroSec_CAF1 68015 95 + 1 ACAUUCUAUAUGCCAUGGCUACAGUUGGUAUCACU----------GAUUG------GACAGAGUGAGCACGAACGGAGUGAAGUGGAGAAAACUCUACUCAAACUCGACUC .((((((....((....))..((((..(.....).----------.))))------...))))))..........((((..(((((((....)))))))...))))..... ( -26.90) >DroEre_CAF1 63183 87 + 1 --------AAAGCCAAAGCUGCAGUUGGUAUCACU----------GAUUG------GACAGAAUGAGCAAAAACGGAGUGGAGUGGAGAAAACUCUACUCAAACUCGACUC --------...((((...(((((((..(.....).----------.))))------..)))..)).)).......((((.((((((((....))))))))..))))..... ( -26.00) >DroYak_CAF1 64943 95 + 1 ACAUUCUGUAAGCUAUAGCUACAGUGGGUAUCACU----------GAUUG------GACAGAGUGAGCAAAAACGGAGUGAAGUGGAGAAAACUCUACUCAAACUCGACUC .((((((((.(((....))).(((((.....))))----------)....------.))))))))..........((((..(((((((....)))))))...))))..... ( -31.50) >DroAna_CAF1 63749 100 + 1 -----------CCUAUAGCUAUAUUUCGUAUCACUAGAGAACCGUGCUUGCUGAGAGAAAGAGAGAACUCAAACGGAUGGGAGCGGAGAAAACUUAACUCAUACCCACCUC -----------............((((...(((...(((.......)))..)))..))))(((....)))....((.((((....(((.........)))...)))))).. ( -16.10) >consensus _CAUUCU_UAAGCCAUAGCUACAGUUGGUAUCACU__________GAUUG______GACAGAGUGAGCAAAAACGGAGUGAAGUGGAGAAAACUCUACUCAAACUCGACUC ...........................((.(((((..........................))))))).......((((..(((((((....)))))))...))))..... ( -9.87 = -10.95 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:58 2006