Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,820,779 – 14,820,885 |
Length | 106 |
Max. P | 0.619339 |
Location | 14,820,779 – 14,820,885 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 97.94 |
Mean single sequence MFE | -23.88 |
Consensus MFE | -22.10 |
Energy contribution | -21.98 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.26 |
Structure conservation index | 0.93 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14820779 106 - 22407834 AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUU-UUUGAGUUGAUGCAAGAGC ..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...))))....-)))))).)))))))..... ( -23.50) >DroSec_CAF1 62282 107 - 1 AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUUUUUUGAGUUGAUGCAAGAGC ..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...)))).....)))))).)))))))..... ( -22.90) >DroSim_CAF1 62853 107 - 1 AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUUUUUUGAGUUGAUGCAAGAGC ..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...)))).....)))))).)))))))..... ( -22.90) >DroEre_CAF1 57939 106 - 1 AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUU-UUUGAGCUGGUGCAAGAGC ..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...))))....-)))))).)))))))..... ( -22.50) >DroYak_CAF1 59575 106 - 1 AAUGCGAAACUUUUUUAAUAUGCAAAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUU-UUUGAGUGGAUGCAAGAGC ..((((.((((((((........))))))))....((((((((((...((((....(((..(((.....))).)))...))))....-))))))))))))))..... ( -27.60) >consensus AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUU_UUUGAGUUGAUGCAAGAGC ..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...)))).....)))))).)))))))..... (-22.10 = -21.98 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:57 2006