Locus 5256

Sequence ID 2L_DroMel_CAF1
Location 14,819,424 – 14,819,519
Length 95
Max. P 0.900302
window8370

overview

Window 0

Location 14,819,424 – 14,819,519
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 93.26
Mean single sequence MFE -18.00
Consensus MFE -16.24
Energy contribution -16.84
Covariance contribution 0.60
Combinations/Pair 1.18
Mean z-score -1.41
Structure conservation index 0.90
SVM decision value 1.01
SVM RNA-class probability 0.900302
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14819424 95 + 22407834
CAAUACGUCCAUAAUUAAAGGAAAGCAAACGUUGCAGAAUUAACUGAGCGGUUUCUGUUAUUUAACAGGAACAAUGAUAAUUAAAAAGGCUACAG
.......(((.........))).(((...((((.(((......)))))))(((((((((....)))))))))................))).... ( -20.00)
>DroSec_CAF1 60913 94 + 1
CAAUAUGUCCAUAAUUAAAGGAAGGCAAACGUU-CAGAAUUAACAGAGCGGUUUCUGUUAUUUAACAGGAACAAUGAUAAUUAAAAAAGCUACAG
.......(((.........))).(((...((((-(..........)))))(((((((((....)))))))))................))).... ( -19.10)
>DroSim_CAF1 61492 95 + 1
CAAUAUGUCCAUAAUUAAAGGAAGGCAAACGUUGCAGAAUUAACUGAGCGGUUUCUGUUAUUUAACAGGAACAAUGAUAAUUAAAAAGGCUACAG
.......(((.........))).(((...((((.(((......)))))))(((((((((....)))))))))................))).... ( -20.00)
>DroEre_CAF1 56700 95 + 1
CAAUAUGUCCAUAAUUAAAGGAAAGCAAACGCUGCAGUAUUAACUGAACGGUUCCUGUUGUUUAACUGGAACAAUGAUAAUUAAAAAGGCUACAG
......(((..((((((.((((((((....))).((((....)))).....)))))(((((((.....)))))))..))))))....)))..... ( -16.80)
>DroYak_CAF1 58394 95 + 1
CAAUAUGUCCAUAAUUAAAGGAAUGCAAACGCUGCAGUAUUAAGUGAGCGGUUUCUGUUGUUUAACUGAAACAAUGAUAAUUAAAAAGGCUACAG
.......(((.........)))..((...((((.((.(....).))))))(((((.(((....))).)))))................))..... ( -14.10)
>consensus
CAAUAUGUCCAUAAUUAAAGGAAAGCAAACGUUGCAGAAUUAACUGAGCGGUUUCUGUUAUUUAACAGGAACAAUGAUAAUUAAAAAGGCUACAG
.......(((.........))).(((...((((.(((......)))))))(((((((((....)))))))))................))).... (-16.24 = -16.84 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:56 2006