Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,817,065 – 14,817,168 |
Length | 103 |
Max. P | 0.995017 |
Location | 14,817,065 – 14,817,168 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.39 |
Mean single sequence MFE | -23.33 |
Consensus MFE | -23.57 |
Energy contribution | -23.90 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 1.01 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.995017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14817065 103 - 22407834 UUUCAAU-----------------UUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU .......-----------------..........(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. ( -24.60) >DroSec_CAF1 58558 103 - 1 UUUCAAU-----------------UUUUUCCCUCUGGCUUGUCAAACGAUAUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU .......-----------------..........(((((...((((((((.((((((..(((.(((..((....))..))).)))..)))))).))).(....).)))))...))))).. ( -21.80) >DroSim_CAF1 59136 103 - 1 UUUCAAU-----------------UUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU .......-----------------..........(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. ( -24.60) >DroEre_CAF1 54331 120 - 1 UUUCAUUUUUUCAAUUUUUCAAUUUUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU ..................................(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. ( -24.60) >DroYak_CAF1 56002 103 - 1 UUUCAAU-----------------UUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU .......-----------------..........(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. ( -24.60) >DroAna_CAF1 54161 102 - 1 UUU-ACU-----------------UUUUUCCCCCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUCCCGUUUACAAUUGCAUUUGCAGUUCUGUUUUCUGUUUGCGUGGUCAAU ...-...-----------------..........(((((...(((((((.(((((((..(((.(((..((....))..))).)))..))))))).)).(....).)))))...))))).. ( -19.80) >consensus UUUCAAU_________________UUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU ..................................(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. (-23.57 = -23.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:55 2006