Locus 5252

Sequence ID 2L_DroMel_CAF1
Location 14,813,031 – 14,813,137
Length 106
Max. P 0.727946
window8362

overview

Window 2

Location 14,813,031 – 14,813,137
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 91.92
Mean single sequence MFE -32.31
Consensus MFE -28.57
Energy contribution -27.77
Covariance contribution -0.80
Combinations/Pair 1.28
Mean z-score -1.44
Structure conservation index 0.88
SVM decision value 0.42
SVM RNA-class probability 0.727946
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14813031 106 + 22407834
AACAG----CAGCAACGUCACUUGAGGCAGACAACAAAAUGGCGCAAGCGUUUCCUUUUGUUGGGCGUAAAACUUAAGGCUUAAGCCUUUCUGGAGAGCCCAACGCCCGA
.....----..((..........((((.((((..(.....)((....))))))))))..(((((((.........(((((....)))))........))))))))).... ( -31.33)
>DroSec_CAF1 54508 106 + 1
AACAG----CAGCAACGUCACUUGAGGCAGACAACAAAAUGGCGCAAGCGUUUCCUUUUGUUGGGCGUAAAACUUAAGGCUUAAGCCUUUCUGGAGAGCCCAGCGCCCGA
.....----..((..........((((.((((..(.....)((....))))))))))..(((((((.........(((((....)))))........))))))))).... ( -31.33)
>DroSim_CAF1 55070 106 + 1
AACAG----CAGCAACAUCACUUGAGGCAGACAACAAAAUGGCGCAAGCGUUUCCUUUUGUUGGGCGUAAAACUUAAGGCUUAAGCCUUUCUGGAGAGCCCAGCGCCCGA
.....----..((..........((((.((((..(.....)((....))))))))))..(((((((.........(((((....)))))........))))))))).... ( -31.33)
>DroEre_CAF1 49893 106 + 1
AACAG----CAGCAACGUCACUUGAGGCAGACAACAAAAUGGCGCAAGCGCUUCCUUUUGUUGGGCGUAAAACUUAAGGCUUAAGCCUUUUUGGAGAGCCCAGCGCCCGA
....(----(..(((......)))..))....(((((((.((((....))))...)))))))((((((.......(((((....)))))..(((.....))))))))).. ( -33.40)
>DroYak_CAF1 51363 109 + 1
AACAGCA-GCAGCAACAUCACUUGAGGCAGACAACAAAAUGGCGCAAGCGCUUCCUUUUGUUGGGCGUAAAACUUAAGGCUUAAGCCUUUCUGGAGAGCCCUGCGCCCGA
.......-((..(((......)))..))....(((((((.((((....))))...)))))))(((((((......(((((....)))))...((.....))))))))).. ( -32.90)
>DroAna_CAF1 40109 109 + 1
AACAACAAGCCACAGCGAUACUUGAGGCAGACAACAAAAUGGCGCAAAUGCCUCCUUUUGUUGGGCGCAAAACUUAAGGCUCAAGCCUUUCUGGAGAGC-CAGUGCCUGA
........(((.(((......))).)))...((((((((.((((....))))...))))))))(((((.......(((((....)))))..(((....)-)))))))... ( -33.60)
>consensus
AACAG____CAGCAACGUCACUUGAGGCAGACAACAAAAUGGCGCAAGCGCUUCCUUUUGUUGGGCGUAAAACUUAAGGCUUAAGCCUUUCUGGAGAGCCCAGCGCCCGA
...........((..((.....))..))....(((((((.((((....))))...)))))))((((((.......(((((....)))))..(((.....))))))))).. (-28.57 = -27.77 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:48 2006