Locus 5251

Sequence ID 2L_DroMel_CAF1
Location 14,812,752 – 14,812,846
Length 94
Max. P 0.788734
window8361

overview

Window 1

Location 14,812,752 – 14,812,846
Length 94
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 92.45
Mean single sequence MFE -31.75
Consensus MFE -27.42
Energy contribution -27.75
Covariance contribution 0.33
Combinations/Pair 1.12
Mean z-score -1.71
Structure conservation index 0.86
SVM decision value 0.58
SVM RNA-class probability 0.788734
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14812752 94 - 22407834
C-CAUUUCACGGGUGUUUAGCCACGGUCCUUUGGCCGCGCCCACUGAUUGAAAAUGCCGCCAAGA---AGGCGUUCAAUUUCAUGGCUGACUACCGGC
.-.......(.((((.((((((((((((....)))))........((((((..(((((.......---.)))))))))))...))))))).)))).). ( -31.70)
>DroSec_CAF1 54225 94 - 1
C-CAUUUCACGGGUGUUUAGCCACGGUCCUUUGGCCGCGCCCACUGAUUGAAAAUGCCGCCAAGA---AGGCGUUCAAUUUCAUGGCUGACUACCGGC
.-.......(.((((.((((((((((((....)))))........((((((..(((((.......---.)))))))))))...))))))).)))).). ( -31.70)
>DroSim_CAF1 54792 94 - 1
C-CAUUUCACGGGUGUUUAGCCACGGUCCUUUGGCCGCGCCCACUGAUUGAAAAUGCCGCCAAGA---AGGCGUUCAAUUUCAUGGCUGACUACCGGC
.-.......(.((((.((((((((((((....)))))........((((((..(((((.......---.)))))))))))...))))))).)))).). ( -31.70)
>DroEre_CAF1 49612 94 - 1
C-CAUUUCACGGGUGUUUAGCCACGGUCCUUUUGCCGUGCCCACUGAUUGAAAAUGCCGCCAAGA---AGGCGUUCAAUUUCAUGGCUGACUACCGGC
.-.......(.((((.(((((((((((......))))).......((((((..(((((.......---.)))))))))))....)))))).)))).). ( -30.70)
>DroYak_CAF1 51091 94 - 1
C-CAUUUCACGGGUGUUUAGCCACGGCCCUUUGGCCGCGCCCACUGAUUGAAAAUGCCGCCAAGA---AGGCGUUCAAUUUCAUGGCUGACUACCGGC
.-.......(.((((.((((((((((((....)))))........((((((..(((((.......---.)))))))))))...))))))).)))).). ( -34.40)
>DroAna_CAF1 39846 98 - 1
CCCAUUUCACGGGUGUUUAGCCACGGCACUUUGGCCACGCCCUCUUAUUGAAAAAGCCUCCGGGCUUCAACCGUUCAAUUUCAUGGCUGGCUGCCGCC
...........((((..((((((.(((......)))..(((.....((((((.(((((....)))))......)))))).....))))))))).)))) ( -30.30)
>consensus
C_CAUUUCACGGGUGUUUAGCCACGGUCCUUUGGCCGCGCCCACUGAUUGAAAAUGCCGCCAAGA___AGGCGUUCAAUUUCAUGGCUGACUACCGGC
...........((((.(((((((((((......))))...........(((((.((.((((........))))..)).)))))))))))).))))... (-27.42 = -27.75 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:47 2006