Locus 525

Sequence ID 2L_DroMel_CAF1
Location 1,604,143 – 1,604,242
Length 99
Max. P 0.619994
window839

overview

Window 9

Location 1,604,143 – 1,604,242
Length 99
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.42
Mean single sequence MFE -32.28
Consensus MFE -25.04
Energy contribution -24.43
Covariance contribution -0.61
Combinations/Pair 1.28
Mean z-score -1.49
Structure conservation index 0.78
SVM decision value 0.18
SVM RNA-class probability 0.619994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1604143 99 - 22407834
GGCAGCGGACUCUUCUGCUGGCUGCUCUGCAGUUUGCGGGAUCGUCUGAAA---AAGAUACAAACGGGGAUGAAAGGAUGAGUCUCGGCA----AGAAGUGGGGGU
(.(((((((....))))))).)..(((..(..(((((((((((((((....---......(....).........)))))).)))).)))----))..)..))).. ( -32.41)
>DroPse_CAF1 130221 90 - 1
GGCAGUGGGCUCUUCUGUUGGCUGUUCUGCAGCUUGCGCGAGCGCCUGCAAUGGGAGAAAGAAAUGC---------GAUGAGAAUGGUUU----AGAAG---GGGU
.........((((((((..(((((((((((((..(((....))).)))).((.(.(........).)---------.)).))))))))))----)))))---)).. ( -26.70)
>DroSec_CAF1 82508 96 - 1
GGCAGCGGACUCUUCUGCUGGCUGCUCUGCAGCUUGCGGGAGCGUCUGAAA---AAGAAACAAACGGAG---CAAGGAUGAGUCUCGACA----AGAAGUGGGGGU
(.(((((((....))))))).)..(((..(..(((((((((.(((((....---...............---...)))))..))))).))----))..)..))).. ( -32.75)
>DroSim_CAF1 84863 96 - 1
GGCAGCGGACUCUUCUGCUGGCUGCUCUGCAGCUUGCGGGAGCGUCUGAAA---AAGAAACAAACGGAG---CAAGGAUGAGUCUCGGCA----AGAAGUGGGGGU
.((..(((((.(((((((.((((((...)))))).))))))).)))))...---..........((..(---(........))..)))).----............ ( -33.40)
>DroEre_CAF1 84268 96 - 1
GGCAGCGGACUCUUCUGCUGGCUGCUUUGCAGUUUGCGGGAGCGUCUGCGA---AAGAUACAAACGGGG---CAAGGAUGAGUCUCGCAA----AGAAAUGGGGGU
.((.((((((.(((((((..(((((...)))))..))))))).))))))..---...........((((---(........)))))))..----............ ( -37.40)
>DroYak_CAF1 82915 100 - 1
GGCAGCGGACUCUUCUGCUGGCUGCUCUGCAGUUUGCGGGAGCGUCUGGGA---AAGAUACAAACGGAG---CAAGGAUGAGUAUCGAAAAAAAAGAAAUGGGGCU
(((..(((((.(((((((..(((((...)))))..))))))).)))))...---..(((((........---.........))))).................))) ( -31.03)
>consensus
GGCAGCGGACUCUUCUGCUGGCUGCUCUGCAGCUUGCGGGAGCGUCUGAAA___AAGAAACAAACGGAG___CAAGGAUGAGUCUCGACA____AGAAGUGGGGGU
.....(((((.(((((((.((((((...)))))).))))))).))))).......................................................... (-25.04 = -24.43 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:19 2006