Locus 5249

Sequence ID 2L_DroMel_CAF1
Location 14,806,889 – 14,807,009
Length 120
Max. P 0.500000
window8357

overview

Window 7

Location 14,806,889 – 14,807,009
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.17
Mean single sequence MFE -33.36
Consensus MFE -21.10
Energy contribution -20.42
Covariance contribution -0.68
Combinations/Pair 1.26
Mean z-score -2.43
Structure conservation index 0.63
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14806889 120 + 22407834
UAGGUCGAAAGAAAUCGCUGACUGGCGUCUGCCAGAAAGUAAAAAAUGUCAAAAACUAUAAACUUAGCGAGGAAGGUGCAACGACUUGGCUUAAUUGCCAUAGUCAAACUAUUGGCGUAC
((.(((((.((...((((((((((((....)))))..(((..............)))......)))))))............((((((((......)))).))))...)).))))).)). ( -32.74)
>DroSec_CAF1 48385 120 + 1
UAGGUCGAAGGCAAUCGCUGACUGGCGUCAGUCAGAAAGUAAAAAAUGUCAAAAACUAUAAACUUAGCGAGGAAGGUGCAACGACCUGGCUAAAUUGCCAUAGUCAAACUAUUGGCGUAC
.((((((...(((.((((((((((((....)))))..(((..............)))......)))))))......)))..))))))(((......)))...(((((....))))).... ( -34.74)
>DroSim_CAF1 48963 120 + 1
UAGGUCGAAGGCAAUCGCUGACUGGCGUCAGCCAGAAAGUAAAAAAUGUCAAAAACUAUAAACUUAGCGAGGAAGGUACAACGACCUGGCUAAAUUGCCAUAGUCAAACUAUUGGCGUAC
((.(((((.((((((.(((..(((((....)))))..))).......................(((((.(((..(......)..))).))))))))))).(((.....)))))))).)). ( -36.30)
>DroEre_CAF1 41212 120 + 1
UAGGUCGAAGGACAUCACUGACAGGCUUCAGUCAGAAAGUAAGAAAUGACCAAAACUAUAAGCUUAGAGAGGAGGGUUCAACGACCUGGCUAAAUUGCAAUGGUCAAAACAUUGCCGUAC
(((((((..((((.((.(((((........)))))....................(((......)))....))..))))..)))))))........((((((.......))))))..... ( -30.40)
>DroYak_CAF1 44346 120 + 1
UAGGUCGAAGGAUAUCGCUGACAGGCUACAGUCAGAAAGUAAAUAAUUACCAAAACUAUAAGCUUAGAGAGGAGGGUGCAACGACCUGGCUAAAUGGCAAUGGUCCAAACAUUGCCGUAC
(((((((..(.((.((.(((((........)))))....................(((......)))....))..)).)..))))))).....(((((((((.......))))))))).. ( -32.60)
>consensus
UAGGUCGAAGGAAAUCGCUGACUGGCGUCAGUCAGAAAGUAAAAAAUGUCAAAAACUAUAAACUUAGCGAGGAAGGUGCAACGACCUGGCUAAAUUGCCAUAGUCAAACUAUUGGCGUAC
.((((((.........(((..(((((....)))))..))).....................((((........))))....))))))(((((........)))))............... (-21.10 = -20.42 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:44 2006