Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,806,584 – 14,806,696 |
Length | 112 |
Max. P | 0.750322 |
Location | 14,806,584 – 14,806,696 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 66.55 |
Mean single sequence MFE | -27.66 |
Consensus MFE | -10.34 |
Energy contribution | -12.98 |
Covariance contribution | 2.64 |
Combinations/Pair | 1.41 |
Mean z-score | -1.92 |
Structure conservation index | 0.37 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14806584 112 - 22407834 AUGGAAAAAUCAAGUCUUACUGCAAAAAGUAGGCAACUAUGAAGCUAAAGCUAAAUCUUUGAA----GUUCAGAACGCGUACCACUUGCCAUCGGGUACGCAUCUCUGA----GCCCCUU ..((.....((((((((.(((......)))))))........(((....)))......)))).----(((((((..(((((((.(........))))))))...)))))----)).)).. ( -31.30) >DroSec_CAF1 48066 116 - 1 AUAGAAAAAUCAAGCCUUGCCGCAAAAAGUAGGCAUCUAUGAAGUGAAAGCAAAAUCAUUAAA----GUUCAGAAUGCGUAUCACUUGUUUUCGGGUACGCAUCUCUGAGCGAGCCCCUU ...((....(((((...((((((.....)).)))).)).))).((....))....))......----((((((((((((((((.(........)))))))))).)))))))......... ( -30.10) >DroSim_CAF1 48644 116 - 1 AUAGAAAAAUCAAGCCUUGCCGCAAAAAGUAGGCAUCUAUGAAGUGAAAGCUAAAUCUUGAAA----GUUCAGAAUGCGUACCACUUGUUUUCGGGUACGCAUCUCUGAGCGAGCCCCUU .........(((((...((((((.....)).)))).......(((....)))....)))))..----((((((((((((((((.(........)))))))))).)))))))......... ( -35.80) >DroEre_CAF1 40945 87 - 1 AUAGAAAAAGCAACUCCUGCUGCGAAAAAUAGGCAAUCAUAAAAAGGCAGCUGCAU----------------------------CUG-UUUUAGGGUACGCAGUUCUAA----GCCCCUU ...((...((((.....))))((.........))..)).......(((((((((((----------------------------((.-.....))))..))))))....----))).... ( -15.00) >DroYak_CAF1 44041 113 - 1 AUAGAAAAAGCAAGUCUUGCUGCGAAAAGUAGACAAUCCGAAAAAA--AAGUGCUUCUUGAAAACCCGUUUCAAAUCUGAACCACUU-UUUUCGGGUUUAGAACUUCCA----GCCUCGU .........((..((((.(((......)))))))(((((((((((.--.((((.(((((((((.....))))))....))).)))))-))))))))))...........----))..... ( -26.10) >consensus AUAGAAAAAUCAAGUCUUGCUGCAAAAAGUAGGCAACUAUGAAGAGAAAGCUAAAUCUUGAAA____GUUCAGAAUGCGUACCACUUGUUUUCGGGUACGCAUCUCUGA____GCCCCUU .............(((.((((......)))))))...................................((((((((((((((.(........)))))))))).)))))........... (-10.34 = -12.98 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:43 2006