Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,797,416 – 14,797,574 |
Length | 158 |
Max. P | 0.999530 |
Location | 14,797,416 – 14,797,516 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 86.37 |
Mean single sequence MFE | -42.06 |
Consensus MFE | -34.38 |
Energy contribution | -34.30 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -4.13 |
Structure conservation index | 0.82 |
SVM decision value | 3.69 |
SVM RNA-class probability | 0.999530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14797416 100 + 22407834 CUCCUU----UAUGUAG----------AUUCAUGAUCGCUGUUCAGCCAUUCGUGAGUCCUUCUCUUGUUUGGGCUUCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACU .(((((----(...(((----------(.((((((..(((....)))...))))))((((..(....)...)))).))))..((((((((((....)))))))))))))))).. ( -38.70) >DroSec_CAF1 44048 100 + 1 CUCCUU----UAUGUAG----------ACUCAUGAUCGCUGUUCAGCCAUUCGUGAGUCCGUCUCUUGUUUGGGCUUCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACU .(((((----(.....(----------((((((((..(((....)))...))))))))).((((.......)))).......((((((((((....)))))))))))))))).. ( -41.50) >DroSim_CAF1 44643 100 + 1 CUCCUU----UAUAUAG----------GCUCAUGAUCGCUGUUCAGCCAUUCGUGAGUCCUUCUCUUGUUUGGGCUUCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACU ..(((.----.(((.((----------((((((((..(((....)))...))))))).))).....)))..)))..(((.((((((((((((....)))))))))))).))).. ( -41.50) >DroEre_CAF1 36994 110 + 1 CUCCCC----UAAGCAGUGGUAAUAAAACUGAUGAUCGCUGUGCGGUCAUUCGUGAGUCCUUCUCUGGUUUGGGCCUCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACU ....((----(.(((((.(((....((((((((((((((...)))))))))...(((.....))).)))))..))).)))))((((((((((....))))))))))..)))... ( -46.00) >DroYak_CAF1 39970 114 + 1 CCCCCUACUAUAUGUAGAGGCAAUAAAACUCUCGAUCGCUGUUCAGCCAUUCGUGAGUCCUUCUCUUGUUUGGGCUUCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACU ...(((........(((((((......((((.(((..(((....)))...))).))))((..(....)...)))))))))((((((((((((....)))))))))))))))... ( -42.60) >consensus CUCCUU____UAUGUAG__________ACUCAUGAUCGCUGUUCAGCCAUUCGUGAGUCCUUCUCUUGUUUGGGCUUCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACU .............................((((((..(((....)))...))))))((((..(((......)))......((((((((((((....)))))))))))).)))). (-34.38 = -34.30 + -0.08)
Location | 14,797,442 – 14,797,551 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 78.39 |
Mean single sequence MFE | -42.30 |
Consensus MFE | -30.14 |
Energy contribution | -30.94 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.20 |
Mean z-score | -2.10 |
Structure conservation index | 0.71 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14797442 109 + 22407834 GUUCAGCCAUUCGUGAGUCCU----UCUCUUGUUUGGGCU--UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGUGACUGGAUUCAGCUCGAGGACGAGGACGAGGA ................(((((----(.(((...(((((((--(((.((((((((((((....)))))))))))).)))(.(....).).....)))))))))).))))))..... ( -42.80) >DroSec_CAF1 44074 103 + 1 GUUCAGCCAUUCGUGAGUCCG----UCUCUUGUUUGGGCU--UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGUGACUGGAUUCAGCUCGAGGACG------AGGA ......(((.(((..((((((----(((.......)))).--....((((((((((((....)))))))))))).)))))..))).)))......((((....))------)).. ( -41.20) >DroSim_CAF1 44669 109 + 1 GUUCAGCCAUUCGUGAGUCCU----UCUCUUGUUUGGGCU--UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGUGACUGGAUUCAGCUCGAGGACGAGGACGAGGA ................(((((----(.(((...(((((((--(((.((((((((((((....)))))))))))).)))(.(....).).....)))))))))).))))))..... ( -42.80) >DroYak_CAF1 40010 107 + 1 GUUCAGCCAUUCGUGAGUCCU----UCUCUUGUUUGGGCU--UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGAGUCUGGAUUCAGCUCGAGGACGAGGACGAU-- ((((((((...((.(((....----.))).))....))))--((..((((((((((((....)))))))))))).(..((.(((.(((....)))))).))..)))))))...-- ( -44.00) >DroAna_CAF1 31922 95 + 1 -CCCACUCACGCGGGAGUCACGCUGUCUC-----UGGUCCUCUUUGUUGGCCUGGCUGUCAGCAGCCAUGGCAACGGACCUGAGCCUGGACCCGGCCUGAC-------------- -.....(((.((.((.(((.....(.(((-----.(((((.....((((.((((((((....)))))).))))))))))).))).)..))))).)).))).-------------- ( -40.70) >consensus GUUCAGCCAUUCGUGAGUCCU____UCUCUUGUUUGGGCU__UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGUGACUGGAUUCAGCUCGAGGACGAGGACGAGGA (((...(((.((((.(((((......(((......)))........((((((((((((....)))))))))))).))))).)))).)))....)))................... (-30.14 = -30.94 + 0.80)
Location | 14,797,478 – 14,797,574 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.08 |
Mean single sequence MFE | -34.88 |
Consensus MFE | -26.27 |
Energy contribution | -26.23 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.23 |
Mean z-score | -1.83 |
Structure conservation index | 0.75 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14797478 96 + 22407834 --UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGUGACUGGAUUCAGCUCGAGGACGAGGACGAGGACAACGACGAGGACCAGAGCACAG --(((.((((((((((((....)))))))))))).)))(((((..((((.(((..((((....))))..((.(.....)..)).))))))).)).))) ( -36.90) >DroSec_CAF1 44110 90 + 1 --UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGUGACUGGAUUCAGCUCGAGGACG------AGGACGACGACGAGGACCAGAGCACAG --(((.((((((((((((....)))))))))))).)))(((((..((((.(((..((((....))------))..((....)).))))))).)).))) ( -36.80) >DroSim_CAF1 44705 96 + 1 --UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGUGACUGGAUUCAGCUCGAGGACGAGGACGAGGACGACGACGAGGACCAGAGCACAG --(((.((((((((((((....)))))))))))).)))(((((..((((.(((..((((....))))..((.(.....)..)).))))))).)).))) ( -36.90) >DroYak_CAF1 40046 93 + 1 --UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGAGUCUGGAUUCAGCUCGAGGACGAGGACGAU---GACGACGAGGACAAGAGCGCAG --(((.((((((((((((....)))))))))))).)))(((((((....)))).((((..(..(..(..((..---..)).)..)..)..)))).))) ( -35.50) >DroAna_CAF1 31956 79 + 1 UCUUUGUUGGCCUGGCUGUCAGCAGCCAUGGCAACGGACCUGAGCCUGGACCCGGCCUGAC-------------------UCGAGGACAAGAGCACAG ..(((((((.((((((((....)))))).))))))))).(((.((((...(((((......-------------------))).))...)).)).))) ( -28.30) >consensus __UCUGUUGGCAUGGUUGUCAGCAGCCGUGCCAAAGGACUGGUGACUGGAUUCAGCUCGAGGACGAGGACGAGGACGACGACGAGGACCAGAGCACAG ..(((.((((((((((((....)))))))))))).)))((((...(((....)))((((......................))))..))))....... (-26.27 = -26.23 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:39 2006