Locus 5245

Sequence ID 2L_DroMel_CAF1
Location 14,796,805 – 14,796,953
Length 148
Max. P 0.838453
window8349 window8350

overview

Window 9

Location 14,796,805 – 14,796,916
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.15
Mean single sequence MFE -24.00
Consensus MFE -16.98
Energy contribution -17.32
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.71
SVM decision value 0.74
SVM RNA-class probability 0.838453
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14796805 111 - 22407834
ACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAGAAUUUUU-GCACAAACAAAAUGUUUGGUU--GGUCAGCGGCA------GCAGGAGCAGCUAGAAAAA
..((((((......))))))................(((.((((((........))))))-.)))..........(((((((--(.((.((....------))..)).)))))))).... ( -27.40)
>DroVir_CAF1 58051 90 - 1
ACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUUAGCACAAACAAAAUGUUUGCUUUUGCUA--CC----------------------------
..((((((......))))))..........((((((....)))))).............((((((((((.....)))))....)))))--..---------------------------- ( -20.10)
>DroGri_CAF1 48021 91 - 1
ACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUU-GCACAAACAAAAUGUUUGCUU--GGUU--CCGUA------G------------------
..((((((......)))))).((((...........))))((((.(((..((((..((((-(......)))))..))))..)--))))--))...------.------------------ ( -20.50)
>DroEre_CAF1 36307 116 - 1
ACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAGAAUUUUU-GCACAAACAAAAUGUUUGGUU--GGUCAGCGGCAGCGGCAGCAGGAGCAGCUA-AAAAA
..((((((......))))))................(((.((((((........))))))-.)))..........(((((((--(.((.((.((....)).))..)).))))))-))... ( -29.50)
>DroMoj_CAF1 58384 90 - 1
ACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUUAGCACAAACAAAAUGUUUGCUUUUGCUG--CC----------------------------
..((((((......))))))..........((((((....)))))).............((((((((((.....)))))....)))))--..---------------------------- ( -19.80)
>DroAna_CAF1 31363 92 - 1
ACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUU-GUACAAACAAAAUGUUUGGUU--GGUC--CGGCG------GC-----------------
..((((((......))))))..............((((.(((.(((((.(((....((((-((....))))))))).)))))--..))--).)))------).----------------- ( -26.70)
>consensus
ACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUU_GCACAAACAAAAUGUUUGCUU__GGUC__CCGCA______G__________________
..((((((......))))))(((.......((((((....))))))..................(((((.....))))).....)))................................. (-16.98 = -17.32 +   0.33)

alignment

Postscript

secondary structure

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dotplot

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Window 0

Location 14,796,837 – 14,796,953
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.73
Mean single sequence MFE -21.78
Consensus MFE -17.24
Energy contribution -17.27
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.66
Structure conservation index 0.79
SVM decision value 0.02
SVM RNA-class probability 0.544442
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14796837 116 - 22407834
UC-CUGUCCCCAAACU-CAU-CCCGCUUAGCUUCGCCAACACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAGAAUUUUU-GCACAAACAAAAUGUUUGG
..-......((((((.-..(-(((((...((...))......((((((......))))))................))))))..............((((-(......))))).)))))) ( -23.60)
>DroVir_CAF1 58061 101 - 1
------------------GC-UUCGCUUAACUCCUCCAACACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUUAGCACAAACAAAAUGUUUGC
------------------..-...(((...............((((((......))))))..........((((((....))))))..............))).(((((.....))))). ( -18.70)
>DroGri_CAF1 48033 101 - 1
------------------GCUUUCGGUUAACUCCUCCAACACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUU-GCACAAACAAAAUGUUUGC
------------------((....((......))(((.....((((((......)))))).((((...........))))))).................-)).(((((.....))))). ( -19.40)
>DroEre_CAF1 36344 116 - 1
UC-CUGUUCCCAAACU-CAU-CCCGCUUAGCUCCGCCAACACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAGAAUUUUU-GCACAAACAAAAUGUUUGG
..-......((((((.-..(-(((((...((...))......((((((......))))))................))))))..............((((-(......))))).)))))) ( -23.60)
>DroMoj_CAF1 58394 118 - 1
UCGCUGUCACCGUCGC-CGU-CUCGCUUAACUCCUCCAACACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUUAGCACAAACAAAAUGUUUGC
..((((........((-...-...))........(((.....((((((......)))))).((((...........)))))))................)))).(((((.....))))). ( -21.40)
>DroAna_CAF1 31376 117 - 1
UC-CGGCCCACAACCUGCAC-UCCGCUUAACUCCGCCAACACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUU-GUACAAACAAAAUGUUUGG
..-...(((((.....((..-...))................((((((......))))))................))))).........((((..((((-((....))))))..)))). ( -24.00)
>consensus
UC_CUGUCCCCAA_CU_CAC_CCCGCUUAACUCCGCCAACACGUUUGCGACUCAGCAAACACCAUCAUCAAUUUCCGUGGGGAAAUCACACAAAAUUUUU_GCACAAACAAAAUGUUUGC
........................((................((((((......))))))..........((((((....))))))...............)).(((((.....))))). (-17.24 = -17.27 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:37 2006