| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,796,118 – 14,796,219 |
| Length | 101 |
| Max. P | 0.806316 |
| Location | 14,796,118 – 14,796,219 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.42 |
| Mean single sequence MFE | -33.28 |
| Consensus MFE | -26.98 |
| Energy contribution | -26.93 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14796118 101 + 22407834 ---AGCUGGCAAAAUGCUGUGUGCUUCGACUUAGGUGGGUCCGCCUAAAAAAACUUUUGAUGACUUUUUGAAAGUUUUACGCUUCACCAGAAGUAAAAC----------------GGCAU ---..........(((((((.((((((...(((((((....))))))).((((((((..(.......)..))))))))...........))))))..))----------------))))) ( -31.70) >DroSec_CAF1 42716 117 + 1 ---AGCUGGCAAAAUGCUGUGUGCUUCGACUUAGGUGGGUCCGCCUAAAAUAACUUUUGAUGACUUUUUGAAAGUUUUACGCUUCACCAGAAGUAAAACGCAAAUUACCCGAACCGGCAU ---.((((((.....))((((((((((...(((((((....)))))))...((((((..(.......)..)))))).............)))))...)))))............)))).. ( -30.30) >DroSim_CAF1 43278 117 + 1 ---AGCCGGCAAAAUGCUGUGUGCUUCGACUUAGGUGGGUCCGCCUAAAAGAACUUUUGAUGACUUUUUGAAAGUUUUACGCUUCACCAGAAGUAAAACGCAAAUUACCCGAACCGGCAU ---.((((((.....))((((((((((...(((((((....))))))).((((((((..(.......)..))))))))...........)))))...)))))............)))).. ( -35.10) >DroEre_CAF1 35594 117 + 1 ---AGCUGGCAAAAUGCUGUGUGCCUCGACUUAGGUGGGUCCGCCUAAAAAAACUUUUGAUGACUUUUUGAAAGUUUUACGCUUCACCAGAAGUAAAACGCAAAUUAGCCGAGCCAGCAU ---.((((((.....((((..(((......(((((((....))))))).((((((((..(.......)..))))))))..(((((....))))).....)))...))))...)))))).. ( -40.00) >DroYak_CAF1 38574 120 + 1 UCAAGCUGGCAAAAUGCUGUGUGCUUCGACUUAGGUGGGUGCGCCUAAAAGAACUUUUGAUGACUUUUUGAAAGUUUUACGCUUCACCAGAAGUAAAACGCAAAUUACCCGAACCAGCAU ....((((((.....))((((((((((...(((((((....))))))).((((((((..(.......)..))))))))...........)))))...)))))............)))).. ( -32.10) >DroAna_CAF1 30832 114 + 1 AC-AACCGGAGAA---CUG--UGUUCGGGCUUAGGCGGCCCCGUCUAAAUAAACUUUUGAUGACUUUUUGAAAGUUUUACAUUUCGCCAGAAGUAGAACGCAAAUUACAUGGGCCAGUCU ..-..(((((.(.---...--).)))))....(((((((((((((.(((......)))))))....((((...(((((((..(((....)))))))))).))))......))))).)))) ( -30.50) >consensus ___AGCUGGCAAAAUGCUGUGUGCUUCGACUUAGGUGGGUCCGCCUAAAAAAACUUUUGAUGACUUUUUGAAAGUUUUACGCUUCACCAGAAGUAAAACGCAAAUUACCCGAACCAGCAU ....(((((............(((......(((((((....))))))).((((((((..(.......)..))))))))..(((((....))))).....)))...........))))).. (-26.98 = -26.93 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:35 2006