| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,793,694 – 14,793,802 |
| Length | 108 |
| Max. P | 0.585124 |
| Location | 14,793,694 – 14,793,802 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 86.28 |
| Mean single sequence MFE | -32.04 |
| Consensus MFE | -27.09 |
| Energy contribution | -27.72 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14793694 108 + 22407834 GUUGACCAAGUUUUUGCUUGCGGUAGGCCAAGGAAAAAUCGGCUGCCAACGAAGGCAAUAAGUGGAGCAACAGA----CAGGCCAACUGAAGCUAAAAGCCGGCAACAGGAC ((((.((..((((((((((.((((.((((.........((.((((((......)))....))).))........----..)))).)))))))).)))))).))))))..... ( -34.61) >DroSec_CAF1 40289 107 + 1 GUUGACCAAGUUUCUGCUUGCGGUAGGCCAAGGAA-AAUCGGCUGCCAACGAAGCCAAUAAGUGGAGCAACAGU----CAGGCCAACUGGAGCUAAAAGCCGGCAACAGGAC ((((.((..((((..((((.((((.((((......-....((((........)))).....((......))...----..)))).))))))))...)))).))))))..... ( -32.30) >DroSim_CAF1 40882 108 + 1 GUUGACCAAGUUUCUGCUUGCGGUAGGCCAAGGAAAAAUCGGCUGCCAACGAAGCCAAUAAGUGGAGCAACAGA----CAGGCCAACUGGAGCUAAAAGCCGGCAAAAGGAC .(((.((..((((..((((.((((.((((...........((((........)))).....((......))...----..)))).))))))))...)))).)))))...... ( -28.90) >DroEre_CAF1 33200 108 + 1 GUUGACCAAGUUUUUGCUUGUGGUAGGCCAAAGAAAAGUCGGCUGCCAACGAAGCCAAUAAGUGGAGCAACAGA----CGGGCCAACUGGAGCUAAAAGCCGGCAACAGGAC ((((.((..((((((((((.((((.((((........(((((((........)))).....((......)).))----).)))).)))))))).)))))).))))))..... ( -33.40) >DroYak_CAF1 36112 108 + 1 GUUGACCAAGUUUUCGCUUGCGGUAGGCCAAGGAAAACUCGGCUGCCAACGAAGCCAAUAAGUGGAGCAACAGA----CAGGCCAACUGGAGCUAAAAGCCGGCAACAGGAC ((((.((..(((((.((((.((((.((((...........((((........)))).....((......))...----..)))).))))))))..))))).))))))..... ( -32.20) >DroAna_CAF1 28345 99 + 1 -UUGACCAAGUUUUUGGUUGCGGUAGGCCCGG-AAAACACGG-----------GCCAAAAACUGGAGCAACAGACCAACAGGCAGACCGAACUGAAAAGCCGGCUAAGGGAC -.........((((..(((.((((.((((((.-......)))-----------))).....(((......)))............)))))))..)))).((......))... ( -30.80) >consensus GUUGACCAAGUUUUUGCUUGCGGUAGGCCAAGGAAAAAUCGGCUGCCAACGAAGCCAAUAAGUGGAGCAACAGA____CAGGCCAACUGGAGCUAAAAGCCGGCAACAGGAC ((((.((..((((((((((.((((.((((...........((((........))))......((......))........)))).)))))))).)))))).))))))..... (-27.09 = -27.72 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:34 2006