Locus 5241

Sequence ID 2L_DroMel_CAF1
Location 14,789,897 – 14,789,994
Length 97
Max. P 0.997979
window8344

overview

Window 4

Location 14,789,897 – 14,789,994
Length 97
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 89.72
Mean single sequence MFE -27.92
Consensus MFE -25.80
Energy contribution -25.80
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -2.13
Structure conservation index 0.92
SVM decision value 2.98
SVM RNA-class probability 0.997979
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14789897 97 + 22407834
ACGAGUAUUUAUUUUGCUGCGAAAUCAACUUUCCGCAG----UAGCUAUCUGCGGGGAGGAAAACAUUAUGACACCGAACAUCUGUGUCCUUGUGGUAAUA
.............((((..(((......((..((((((----.......))))))..))...........(((((.(.....).))))).)))..)))).. ( -29.70)
>DroSec_CAF1 36385 101 + 1
ACGAGUAUUUAUUUUGCUGCGAAAUCAACUUUCCGCAGAGGUUGGUUAUCUGCGGGGAGGAAAACAUUAUGACACCGAACAUCUGUGUCCUUGUGGUAAUA
.............((((..(((......((..(((((((.........)))))))..))...........(((((.(.....).))))).)))..)))).. ( -31.20)
>DroSim_CAF1 36981 101 + 1
ACGAGUAUUUAUUUUGCUGCGAAAUCAACUUUCCGCAGAGGUUGGUUAUCUGCGGGCAGGAAAACAUUAUGACACCGAACAUCUGUGUCCUUGUGGUAAUA
(((((......((((.(((((....)......(((((((.........))))))))))).))))......(((((.(.....).))))))))))....... ( -28.30)
>DroEre_CAF1 29327 91 + 1
------AUUUAUUUUGCUGCGAAAUCAACUUUCCGCAG----UGGUUAUCUGCGGGGAGAAAAACAUUAUGACAUCGAACAUCUGUGUCCUUGUGGUAAUA
------.......((((..(((......((..((((((----.......))))))..))...........(((((.(.....).))))).)))..)))).. ( -28.00)
>DroYak_CAF1 33675 91 + 1
------AUUUAUUUUGCUGCGAAAUCAACUUUCCUCGG----UGGCUAUCUGUGGGGAGAGAAACAUUAUGACAUCGAACAUCUGUGUCCUUGUGGUAAUA
------.......((((..(((......((((((((.(----..(....)..))))))))).........(((((.(.....).))))).)))..)))).. ( -22.40)
>consensus
ACGAGUAUUUAUUUUGCUGCGAAAUCAACUUUCCGCAG____UGGUUAUCUGCGGGGAGGAAAACAUUAUGACACCGAACAUCUGUGUCCUUGUGGUAAUA
.............((((..(((......((((((((((...........))))))))))...........(((((.(.....).))))).)))..)))).. (-25.80 = -25.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:31 2006