| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,603,546 – 1,603,642 |
| Length | 96 |
| Max. P | 0.940238 |
| Location | 1,603,546 – 1,603,642 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.71 |
| Mean single sequence MFE | -33.59 |
| Consensus MFE | -20.82 |
| Energy contribution | -20.88 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.940238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1603546 96 + 22407834 AUGGACAAGAUAACGAUUGCGGCCAGUGCGGCCAUUUGUGGCACCAUCAUUGUGGCCGUGAUAGUCUUCAUCGCUGCCAGCAGGUGGGU--U----------------CCUC----UG ..((((..((..((.((..(((((((((..((((....))))..))).....))))))..)).))..))....(..((....))..)))--)----------------)...----.. ( -34.60) >DroGri_CAF1 107285 108 + 1 AUGGAUAAGAUAACGAUAGCGGCAAGUGCCGCCAUUUGUGGCACCAUCAUUGUGGCCGUGAUUGUAUUCAUCGCAGCAAGCAGGUAAGAAUAAUUACAAGCAUUUAU----------U .(((((..((..(((((.(((((..(((((((.....)))))))(((....)))))))).)))))..))))).))....((..((((......))))..))......----------. ( -30.80) >DroWil_CAF1 137769 96 + 1 AUGGAUAAAAUAACAAUAGCGGCAAGUGCAGCAAUUUGUGGUACAAUUAUUGUGGCAGUGAUUGUGUUUAUAGCAGCCAGCAGGUGAGU-G-----------------CCAG----UA .(((.......(((....((.((((((......)))))).))((((((((((...)))))))))))))........)))...(((....-)-----------------))..----.. ( -21.56) >DroYak_CAF1 82235 102 + 1 AUGGACAAGAUAACGAUUGCGGCCAGUGCGGCCAUUUGUGGCACCAUCAUUGUGGCCGUGAUUGUCUUCAUCGCUGCCAGCAGGUGAGC-UU-----------CUACUCUUA----UA .((((...((..(((((..(((((((((..((((....))))..))).....))))))..)))))..))...((((((....))).)))-.)-----------)))......----.. ( -37.70) >DroMoj_CAF1 126991 97 + 1 AUGGAUAAGAUAACGAUUGCAGCAAGUGCCGCCAUUUGUGGCACCAUCAUUGUCGCUGUGAUUGUCUUCAUUGCAGCCAGCAGGUGAGU-GA----------------GGGC----GG ..............(((..((((..(((((((.....)))))))((....))..))))..)))(((((((((...(((....))).)))-))----------------))))----.. ( -35.00) >DroAna_CAF1 112226 101 + 1 AUGGACAAGAUAACGAUUGCGGCCAGUGCCGCCAUUUGUGGCACCAUCAUUGUGGCCGUGAUUGUCUUCAUUGCUGCCAGCAGGUGGGU-UC----------------UCUAUCCCAG .(((.(((((..(((((..(((((((((((((.....)))))))((....))))))))..)))))..)).)))...))).....((((.-..----------------.....)))). ( -41.90) >consensus AUGGACAAGAUAACGAUUGCGGCAAGUGCCGCCAUUUGUGGCACCAUCAUUGUGGCCGUGAUUGUCUUCAUCGCAGCCAGCAGGUGAGU_UA________________CCUA____UG ............(((((((((((.((((..((((....)))).....))))...))))))))))).((((((((.....)).)))))).............................. (-20.82 = -20.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:18 2006