| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,788,752 – 14,788,842 |
| Length | 90 |
| Max. P | 0.998952 |
| Location | 14,788,752 – 14,788,842 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -32.32 |
| Consensus MFE | -29.84 |
| Energy contribution | -29.52 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.92 |
| SVM decision value | 3.30 |
| SVM RNA-class probability | 0.998952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14788752 90 + 22407834 UGCAGUUGGCCGCGGGGUCCUUGUUCUUGUUGUGAUUGCGAUUGUCACGGCAACUGCGAUGGACACACCAGCUCUGUCACACACUCACAU ....((((((.((((.((((((((..((((((((((.......))))))))))..)))).))))...)).))...)))).))........ ( -29.60) >DroSec_CAF1 35244 90 + 1 AGCAGUUGCCCGCGAGGUCCUUGUUUUUGUUGAGAUUGGGAUUGUCACGGCAACUGCGAUGGACACACCAGCUCCGUCACACACUCACAU .(((((((((.(.((((((((.(((((....))))).)))))).)).))))))))))(((((((......).))))))............ ( -34.80) >DroSim_CAF1 35852 90 + 1 UGCAGUUGCCCGCGAGGUCCUUGUUCUUGUUGUGAUUGGGAUUGUCACGGCAACUGCGAUGGACACACCAGCUCCGUCACACACUCACAU .(((((((((.((((((.......)))))).(((((.......))))))))))))))(((((((......).))))))............ ( -33.70) >DroEre_CAF1 27992 90 + 1 UGCAGUUGCCUGCGGGGUCCUUGUUCUUGUUGUGAUUGGGAUUGUCACGGCAACUGCGAUGGACACACCAGCUCCGUCACACACUCACAU .(((((((((.((((((.......)))))).(((((.......))))))))))))))(((((((......).))))))............ ( -33.20) >DroYak_CAF1 32337 90 + 1 UGCAGUUGCCUGCGGGGUCCUUGUUCUUGUUGUGAUUGGGAUUGUCACGGCAACUGCGAUGGACACACCAGCUUCGUCACACACUCACAU .(((((((((.((((((.......)))))).(((((.......))))))))))))))(((((((......).))))))............ ( -30.30) >consensus UGCAGUUGCCCGCGGGGUCCUUGUUCUUGUUGUGAUUGGGAUUGUCACGGCAACUGCGAUGGACACACCAGCUCCGUCACACACUCACAU .(((((((((.((((((.......)))))).(((((.......))))))))))))))(((((((......).))))))............ (-29.84 = -29.52 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:28 2006