| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,786,415 – 14,786,514 |
| Length | 99 |
| Max. P | 0.812963 |
| Location | 14,786,415 – 14,786,514 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.86 |
| Mean single sequence MFE | -28.41 |
| Consensus MFE | -14.85 |
| Energy contribution | -15.95 |
| Covariance contribution | 1.10 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14786415 99 - 22407834 AAAAACGUACGGAAAGAAGUUAGUAUUGGUAGCGGAUUACUAUACACAUACAAUUG--UGU--GUGU-----GGGUGAAUUUAUGGCCAUUGAAUAUAUUUUCUUCCC ..........((((..((((...((.((((.(..((((.(((((((((((....))--)))--))))-----))...))))..).)))).)).....))))..)))). ( -27.40) >DroSec_CAF1 32920 100 - 1 A-AAACGUCCGGAAAGAAGUUAGUAUUGGGAGCGGAUUACUAUACACAUACAAUUG--UGUGUGUGU-----GGGUGAAUUUAUAGCCAUUGAAUAUAAUUUUUUUCC .-........((((((((((((.((.(((..(..((((.((((((((((((....)--)))))))))-----))...))))..)..))).))....)))))))))))) ( -33.00) >DroSim_CAF1 30992 100 - 1 A-AAACGUCCGGAAAGAAGUUAGUAUUGGGAGCGGAUUACUAUACAUAUACAAUUG--UGUGUGUGU-----GGGUGAAUUUAUAGCCAUUGAAUAUAAUUUUUUCCC .-........((((((((..((....(((..(..((((.((((((((((((....)--)))))))))-----))...))))..)..))).....))...)))))))). ( -27.30) >DroEre_CAF1 25725 100 - 1 A-AAACGGCCGGGAAGAAGUUAGUACUGCCAGCGGAUUACCAUGCA-AUACAAU-GGGUGUGUGUGU-----GGGUGAAUUUAUGGCCAUUGAAUAUAAUUUUUUCCC .-........((((((((((((.....((((..(((((.(((((((-.((((..-...)))))))))-----))...))))).)))).........)))))))))))) ( -30.74) >DroYak_CAF1 30077 102 - 1 A-AAACGGCCGGAAAGAAGUUAGUAUUGGGAGCGGAUUACUAUACACAUACAAUUGCAUGUGUGUGU-----GGGCGAAUUUAUGGCCAUUGAAUAUAAUUUUUUCCC .-........((((((((..((....(((..(..((((.(((((((((((........)))))))))-----))...))))..)..))).....))...)))))))). ( -26.40) >DroAna_CAF1 22561 92 - 1 A-AAAU-----GAAAGAAGUUAGCACUGGCAGCGGGUUACG-UGCA-------U-GGAUGUGUGCGAAUUUAUGGUUAACUUAUUGCCUGUGGAUACAGUUUUUUC-C .-....-----(((((((.(((.(((.(((((..(((((((-..((-------(-....)))..))..........)))))..))))).)))..)).).)))))))-. ( -25.60) >consensus A_AAACGUCCGGAAAGAAGUUAGUAUUGGGAGCGGAUUACUAUACACAUACAAUUG__UGUGUGUGU_____GGGUGAAUUUAUGGCCAUUGAAUAUAAUUUUUUCCC ..........((((((((.....((.(((..(..((((.((..(((((((((......))))))))).....))...))))..)..))).)).......)))))))). (-14.85 = -15.95 + 1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:23 2006