Locus 5236

Sequence ID 2L_DroMel_CAF1
Location 14,785,796 – 14,785,889
Length 93
Max. P 0.618395
window8335

overview

Window 5

Location 14,785,796 – 14,785,889
Length 93
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 81.30
Mean single sequence MFE -39.45
Consensus MFE -21.64
Energy contribution -21.87
Covariance contribution 0.23
Combinations/Pair 1.27
Mean z-score -2.21
Structure conservation index 0.55
SVM decision value 0.17
SVM RNA-class probability 0.618395
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14785796 93 - 22407834
GAGGUUUGGAAC---CGU-----CCUAGGGGAUCGUGGGGUCGGAG-----A-GGAGCCUUCGGUGCUAGUGCCUAAUGGCACUUAAGCUUAGGCAUCUCCUCUGGU
...........(---(((-----((((.(....).))))).)))((-----(-(((((((..(((...((((((....))))))...))).))))...))))))... ( -37.80)
>DroSec_CAF1 32276 93 - 1
GAGGUUUGGAAC---CGA-----CCUAGGGGAUCGUGAGGUUGGGG-----A-GGAGCCUUCGGUGCUAGUGCCUAAUGGCACUUAAGCUUAGGCAUCUCCUCUGGU
.(((((.(....---)))-----)))....((((....))))((((-----(-(..((((..(((...((((((....))))))...))).))))..)))))).... ( -40.00)
>DroSim_CAF1 30348 93 - 1
GAGGUUUGGAAC---CGA-----CCUAGGGGAUCGUGAGGUUGGGG-----A-GGAGCCUUCGGUGCUAGUGCCUAAUGGCACUUAAGCUUAGGCAUCUCCUCUGGU
.(((((.(....---)))-----)))....((((....))))((((-----(-(..((((..(((...((((((....))))))...))).))))..)))))).... ( -40.00)
>DroEre_CAF1 25128 97 - 1
GAGGUUUGGAAC---CGACGCCACCUCGGGGAUGGUGGAGCCGGGU-------GGAGCCUUCGGUGCUAGUGCCUAAUGGCACUUAAGCUUAGGCAUCUCCUCUGGU
((((...(((.(---((.(.(((((........))))).).)))..-------...((((..(((...((((((....))))))...))).)))).))))))).... ( -40.30)
>DroYak_CAF1 29484 93 - 1
GAGGUUUGGAAC---CGA-----CCUCGGGGAUGGUGGCGUCGGGG-----A-GCGGACUUCGGUAGCAGUGCCUAAUGGCACUUAAGCUUAGGCAUCUCCCCUGGU
((((((.(....---)))-----))))(((((.((((.((((.(..-----.-.).)))......(((((((((....))))))...)))..).))))))))).... ( -40.30)
>DroAna_CAF1 21860 101 - 1
GAGUUUC-CAGCUAAGGG-----CGGAGGGUGUCGUGGUGCAGGGACAUGGACGAAAGCCUCGGUGCCAGUGCCUAAUGGCACUUAAGCUUAGGCAUCUCUUCGGGC
.....((-(.((.....)-----)((((((((((.....((.((.((..((.(....)))...)).))((((((....))))))...))...)))))).))))))). ( -38.30)
>consensus
GAGGUUUGGAAC___CGA_____CCUAGGGGAUCGUGGGGUCGGGG_____A_GGAGCCUUCGGUGCUAGUGCCUAAUGGCACUUAAGCUUAGGCAUCUCCUCUGGU
.......................((..(((((((....))))..............((((..(((...((((((....))))))...))).))))....)))..)). (-21.64 = -21.87 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:22 2006