| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,782,767 – 14,782,863 |
| Length | 96 |
| Max. P | 0.769350 |
| Location | 14,782,767 – 14,782,863 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.41 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -15.48 |
| Energy contribution | -17.57 |
| Covariance contribution | 2.09 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.769350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14782767 96 + 22407834 -CGGUGGGUGAAGCUGGUGCAGU------GGAACUGGAUGCCAG--------UGGAUUGGGAG--UCUGGUUACUUAAGCAUAUUGCAAAUAGACUGCAUAAUGAGCUACGCU -.....((((.((((.(((((((------..(((..(((.((((--------....))))..)--))..)))......((.....))......)))))))....)))).)))) ( -30.40) >DroGri_CAF1 27478 76 + 1 ----------------------U------GGAGAGGGGUGGCAA--------GGCAUUCGGAGCAACCAGUCGCUUAAGCAUAUUGUAAAUAGACUGCAUAAUGAGCUGCGC- ----------------------.------........(..((..--------.((.......))...(((((((....)).(((.....))))))))........))..)..- ( -13.50) >DroSec_CAF1 29148 105 + 1 GCGGUGGGAGUUGCUGGUGCAGC------GGAACUGGAUGCCCGGGAAACUGGGGAUUGGGAG--UCUGGUUACUUAAGCAUAUUGCAAAUAGACUGCGUAAUGAGCUACGCU ((((((...(((...((((.(.(------(((.((.(((.(((((....))))).))).))..--)))).)))))..))).)))))).........(((((......))))). ( -37.00) >DroSim_CAF1 27174 105 + 1 GCGGUGGGUGUUGCUGGUGCAGU------GGAACUGGAUGCCCGGGAAACUGGGGAUUGGGAG--UCUGGUUACUUAAGCAUAUUGCAAAUAGACUGCAUAAUGAGCUACGCU ......(((((.(((.(((((((------(((.((.(((.(((((....))))).))).))..--)))..........((.....))......)))))))....))).))))) ( -38.00) >DroEre_CAF1 22314 103 + 1 -UG---GGUG----CGGUGCGGUGGAACUGGAACUGGAUGCCCGGGAAACUGGGGAUUGGGAG--UCUGGUUACUUAAGCAUAUUGCAAAUAGACUGCAUAAUGAGCUACGCU -.(---.(((----(.(((((((..(((..((.((.(((.(((((....))))).))).))..--))..)))......((.....))......))))))).....)).)).). ( -38.10) >DroYak_CAF1 26274 104 + 1 -UGGUGGGUGUAGUCGGUGCAGU------GGUACUGGAUGCCCGGGAAACUGGGGAUUGGGAG--UCUGGUUACUUAAGCAUAUUGCAAAUAGACUGCAUAAUGAGCUACGCU -((((..((((((((..((((((------(...((.(((.(((((....))))).))).))..--....(((.....))).)))))))....)))))))).....)))).... ( -38.60) >consensus _CGGUGGGUGU_GCUGGUGCAGU______GGAACUGGAUGCCCGGGAAACUGGGGAUUGGGAG__UCUGGUUACUUAAGCAUAUUGCAAAUAGACUGCAUAAUGAGCUACGCU ................(((((((..........((.(((.(((((....))))).))).)).................((.....))......)))))))............. (-15.48 = -17.57 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:20 2006