| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,781,381 – 14,781,473 |
| Length | 92 |
| Max. P | 0.968943 |
| Location | 14,781,381 – 14,781,473 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 69.17 |
| Mean single sequence MFE | -27.14 |
| Consensus MFE | -14.00 |
| Energy contribution | -15.64 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14781381 92 - 22407834 ------------------AACUAUUUUAAUGAACACCCAGUAUGAGCC-----AUCUCUAUUCUGGGGUAUCUUGUAUUGGGGAUUGUUUGGCCAGAGUUCGAGUGGUGGAGCUA ------------------.................(((((((..((..-----(((((......)))))..))..)))))))....((((.((((.........)))).)))).. ( -27.30) >DroSec_CAF1 27811 92 - 1 ------------------AAAUAUUUUAAUGAACACCCAGUAUGAGGC-----AUCUCUAUUCUGGGGUAUCUUGUAUUGGGGAUGGUUCGGCCAGAGUUCGAGUGGUGGAGCUA ------------------.................(((((((..((..-----(((((......)))))..))..)))))))..((((((.((((.........)))).)))))) ( -33.20) >DroSim_CAF1 25788 92 - 1 ------------------AAUUAUUUUAAUGAACACCCAGUAUAAGGC-----AUCUCUAUUCUGGGAUAUCUUGUAUUGGGGAUUGUUCGGCCAGAGUUCGAGUGGUGGAGCUA ------------------.................(((((((((((..-----(((((......)))))..)))))))))))....((((.((((.........)))).)))).. ( -32.90) >DroEre_CAF1 20953 79 - 1 ------------------AAAUACUUUAAAGAACACCCAGUAUGAAGC-----AUCUCUAUUCUGGGGUAUCUUGUAUUGG-------------AGAGUUCGAGUUGUGGAACUA ------------------............((((.(((((((..(.(.-----(((((......))))).).)..))))))-------------.).)))).((((....)))). ( -18.30) >DroAna_CAF1 18032 113 - 1 UGUACGACUAUUCACCUUAAGGACUAGAAAAAACACCCUUUAUGAUCGGGAAAAAUUCUG--UUGAGCAAACUUGUAUUGGGGCUGGUGUGGCUGGAAUUCAAGCUAUGCAGGCA (((.((((......((....))...((((......(((.........))).....)))))--))).))).............(((.((((((((........)))))))).))). ( -24.00) >consensus __________________AAAUAUUUUAAUGAACACCCAGUAUGAGGC_____AUCUCUAUUCUGGGGUAUCUUGUAUUGGGGAUGGUUCGGCCAGAGUUCGAGUGGUGGAGCUA ...................................((((((((((((......(((((......))))).))))))))))))..............(((((........))))). (-14.00 = -15.64 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:19 2006