Locus 5232

Sequence ID 2L_DroMel_CAF1
Location 14,781,115 – 14,781,218
Length 103
Max. P 0.547811
window8330

overview

Window 0

Location 14,781,115 – 14,781,218
Length 103
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 82.54
Mean single sequence MFE -28.57
Consensus MFE -15.02
Energy contribution -16.57
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -2.61
Structure conservation index 0.53
SVM decision value 0.03
SVM RNA-class probability 0.547811
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14781115 103 - 22407834
GUUUUCAUUCUU---UCGUAG-AUAUUUCGCUGCCUUC---------GCUAACGAGGCAGUUAAAACGAAUCU-ACGCCAAUUUCUGAAUUGCUUCGAACUUCAGCUAGAAAUUGCA
............---.(((((-((.(((.(((((((.(---------(....))))))))).)))....))))-))).(((((((((....(((.........)))))))))))).. ( -26.60)
>DroSec_CAF1 27545 103 - 1
GUUUUCAUUCUU---UCGUAG-AUAUUUCGCUGCCUUC---------ACUAACGAGGCAGUUAAAACGAAUCU-ACGCCAAUUUCUGAAUUGCUUCGAACUGCAGCUAGAAAUUGCA
............---.(((((-((.(((.((((((((.---------......)))))))).)))....))))-))).(((((((((..((((........)))).))))))))).. ( -29.20)
>DroSim_CAF1 25522 103 - 1
GUUUUCAUUCUU---UCGUAG-AUAUUUCGCUGCCUUC---------ACUAACGAGGCAGUUAAAACGAAUCU-ACGCCAAUUUCUGAAUUGCUUCGAACUGCAGCUAGAAAUUGCA
............---.(((((-((.(((.((((((((.---------......)))))))).)))....))))-))).(((((((((..((((........)))).))))))))).. ( -29.20)
>DroEre_CAF1 20682 103 - 1
GUUUUCAUUCUU---UCGCAG-AUAUUUCGCUGCCUUC---------ACUAACGAGGCAGUUAAAACGAAUUU-GCGCCAAUUUCUGAAUUGCUUCGAACUGCAGCUAGAAAUUGCA
............---.(((((-((.(((.((((((((.---------......)))))))).)))....))))-))).(((((((((..((((........)))).))))))))).. ( -28.60)
>DroYak_CAF1 24615 102 - 1
GUUUUCAUUCUU---UCGUAG-AUAUUUUCCUGCCUUC---------GCUAACGAGGCAGUUA-AACGAAUCU-ACGCCAAUUUCGGAAUUGCUUCGAACUGCAGCUAGAAAUUGCA
............---.(((((-((.(((..((((((.(---------(....))))))))..)-))...))))-))).(((((((....((((........))))...))))))).. ( -28.40)
>DroMoj_CAF1 31064 104 - 1
GUUUUCAGUCAGAGAGCGUACAAUUUUUAUGUGCCUUCGAUGGCCGAGCUAACGAGGCAGUUAAACGGAAGCGAAUGCCGAUUUCUGAC------------GCUGCU-GCAAUCGCC
.......((((((((((((......((((..(((((.((.((((...)))).)))))))..))))((....)).))))...))))))))------------((....-))....... ( -29.40)
>consensus
GUUUUCAUUCUU___UCGUAG_AUAUUUCGCUGCCUUC_________ACUAACGAGGCAGUUAAAACGAAUCU_ACGCCAAUUUCUGAAUUGCUUCGAACUGCAGCUAGAAAUUGCA
.........................(((.((((((((................)))))))).)))...........((.((((((((...(((........)))..)))))))))). (-15.02 = -16.57 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:17 2006