Locus 5231

Sequence ID 2L_DroMel_CAF1
Location 14,779,291 – 14,779,397
Length 106
Max. P 0.904275
window8329

overview

Window 9

Location 14,779,291 – 14,779,397
Length 106
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 90.29
Mean single sequence MFE -29.75
Consensus MFE -25.62
Energy contribution -25.40
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.56
Structure conservation index 0.86
SVM decision value 1.03
SVM RNA-class probability 0.904275
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14779291 106 - 22407834
UACUACUCGGAUUCCAAAACAGACUUUCCAAGACUAUGAUUAUGACACCAAUCAUGGAUCGCAUUGGGAUUGGAACUAUAGUCCCGAGUGGUAUCCUGGAGGAUAC
.((((((((((...............)))..((((((((((........)))))))).)).....(((((((......))))))))))))))((((....)))).. ( -31.86)
>DroSec_CAF1 25806 97 - 1
UAC---------UCCAAAACAGACUUUCCAAGACUACGAUUACGACACCAAUCAUGGAUCGCAUUGGGAUUGGAACUACAGUCCCGAGUGGUAUCCUGGAGGCUAC
..(---------((((.................(((.((((........)))).)))(((((.(((((((((......))))))))))))))....)))))..... ( -28.70)
>DroSim_CAF1 23795 97 - 1
AAC---------UCCAAAACAGACUUACCAAGACUACGAUUACGACACCAAUCAUGGAUCGCAUUGGGAUUGGAACUACAGUCCCGAGUGGUAUCCUGGAGGAUAC
..(---------((((.................(((.((((........)))).)))(((((.(((((((((......))))))))))))))....)))))..... ( -28.70)
>consensus
UAC_________UCCAAAACAGACUUUCCAAGACUACGAUUACGACACCAAUCAUGGAUCGCAUUGGGAUUGGAACUACAGUCCCGAGUGGUAUCCUGGAGGAUAC
.......................(((.(((.(((((.((((........)))).)))(((((.(((((((((......)))))))))))))).)).)))))).... (-25.62 = -25.40 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:16 2006