Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,596,277 – 1,596,375 |
Length | 98 |
Max. P | 0.890538 |
Location | 1,596,277 – 1,596,375 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 75.24 |
Mean single sequence MFE | -30.93 |
Consensus MFE | -18.40 |
Energy contribution | -18.10 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.28 |
Mean z-score | -1.77 |
Structure conservation index | 0.59 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1596277 98 - 22407834 AAACUACAGAUGCUUAACGUUUGCGUGGAGCGUCGCGUGCAACGGGAGGCGAAUAGCA---AAAGAAAAUC---------CGAGGGAAUGGUGGGAAAAGCUAGUUCCGA ....(((.(((((((.(((....))).)))))))..)))...((((..((.....)).---........))---------)).((((.((((.......)))).)))).. ( -24.60) >DroPse_CAF1 121257 98 - 1 AAGCUGCAAAUGCUCAACGUCUGCGUGGAGCGUCGCGUGCAGCGGGAGGCAAACAGCA---AACGCAAACAGCACCAGGACCAGGCACUG---------GCCAUAUCCGA ..((((((.((((((.(((....))).))))))....)))))).((((((.....((.---...))...(((..((.......))..)))---------)))...))).. ( -34.80) >DroEre_CAF1 76343 98 - 1 AAACUCCAGAUGCUCAACGUUUGCGUGGAGCGUCGCGUGCAACGGGAGGCGAAUAGCA---AAAGAAAAUC---------CGAGGGAAUGGUGCGAAAAGCUAGUGCCGA ...((((.(((((((.(((....))).))))))).((.....))))))((.....)).---........((---------(...))).(((..(.........)..))). ( -30.30) >DroYak_CAF1 74935 98 - 1 AAGCUCCAGAUGCUCAACGUUUGCGUGGAGCGUCGCGUGCAACGGGAGGCGAAUAGCA---AAAGAAAAUC---------UGAGGGACUGGUGGGAAAAGCCAGUGCCGA ...((((.(((((((.(((....))).))))))).((.....))))))((.....)).---..........---------...((.((((((.......)))))).)).. ( -36.70) >DroAna_CAF1 105342 95 - 1 AAACUCCAGAUGCUGAAUGUUUGUGUGGAGCGUCGCGUGCAACAAGAGGCAAUUGGCAAGAAAAGAAAAUC---------CGAGGGA------GGGAAACCCAGUUCCCA .....((((.((((...((((.(..(((.....).))..)))))...)))).))))...............---------...((((------((....))....)))). ( -24.40) >DroPer_CAF1 123932 98 - 1 AAGCUGCAAAUGCUCAACGUCUGCGUGGAGCGUCGCGUGCAGCGGGAGGCAAACAGCA---AACGCAAACAGCACCAGGACCAGGCACUG---------GCCAUAUCCGA ..((((((.((((((.(((....))).))))))....)))))).((((((.....((.---...))...(((..((.......))..)))---------)))...))).. ( -34.80) >consensus AAACUCCAGAUGCUCAACGUUUGCGUGGAGCGUCGCGUGCAACGGGAGGCAAAUAGCA___AAAGAAAAUC_________CGAGGGACUG___GGAAAAGCCAGUUCCGA ....(((.(((((((.(((....))).)))))))((.(((........)))....))...........................)))....................... (-18.40 = -18.10 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:17 2006