| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,768,926 – 14,769,020 |
| Length | 94 |
| Max. P | 0.890409 |
| Location | 14,768,926 – 14,769,020 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.83 |
| Mean single sequence MFE | -11.87 |
| Consensus MFE | -5.98 |
| Energy contribution | -6.15 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14768926 94 + 22407834 AAUUG-CUAGACCAGCGUAAAAUUUU-GCGCUGACUUCAUUAAAAAAUAACA---CAAAAAAAUGUCUAACAAAAA-----AAGAAUAGG----AAAUAAAAUUGCA----A ..(((-.(((((((((((((....))-)))))).....(((....)))....---.........))))).)))...-----.........----.............----. ( -14.60) >DroSec_CAF1 15436 94 + 1 AAUUG-CUAGCGCAGCGUAAAAUUUU-GCGCUGACUUCAUUAAAAAAUAACAC--AAAAAAAAUGUCUAACAAA-A-----AAGAAAAAG----AAAUAAAAUUGCA----A ..(((-(.....((((((((....))-))))))....................--..........(((......-.-----.))).....----..........)))----) ( -13.10) >DroSim_CAF1 13155 93 + 1 AAUUG-CUAGCCCAGCGUAAAAUUUU-GCGCUGACUUCAUUAAAAAAUAACA---AAAAAAAAUGUCUAACAAA-A-----AAGAAAAAG----AAAUAAAAUUGCA----A ..(((-(.....((((((((....))-))))))...................---..........(((......-.-----.))).....----..........)))----) ( -13.20) >DroYak_CAF1 12652 103 + 1 AAUUG-CUAGCCCAGCGUAAAAUUUU-GCGCUGACUUCAUUAAAAAAUAACA---CGAAAAAAUGUCUAACAAAAGGAAAAAAAAUAAAGAAAGAAAUCAAAUUGCA----A ..(((-(.....((((((((....))-))))))...................---..........(((.......)))..........................)))----) ( -12.90) >DroMoj_CAF1 16685 86 + 1 ACACG-CCCACACAGCGGAAAUUUUUAGCGCUGACUUCAUUAAAAAUGAAAU-AAAGGA----------ACAAA----------AAUUGC----AAGCAAAUUCACGACUUG .....-.((...(((((...........)))))..(((((.....)))))..-...)).----------.....----------.....(----((((........).)))) ( -10.80) >DroAna_CAF1 10222 86 + 1 AACUGACUGGCACAGCAAAAAUUUUU-ACGCUGACUUCAUUAAAAAAUACCA---AAAAAA----UCUUGCAAAA------AA----UAG----AAAUAAAACUGCA----A ............((((..........-..))))...................---......----...((((...------..----((.----...))....))))----. ( -6.60) >consensus AAUUG_CUAGCCCAGCGUAAAAUUUU_GCGCUGACUUCAUUAAAAAAUAACA___AAAAAAAAUGUCUAACAAA_A_____AAGAAAAAG____AAAUAAAAUUGCA____A ............(((((...........)))))............................................................................... ( -5.98 = -6.15 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:06 2006