Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,766,000 – 14,766,096 |
Length | 96 |
Max. P | 0.919100 |
Location | 14,766,000 – 14,766,096 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 87.94 |
Mean single sequence MFE | -24.92 |
Consensus MFE | -21.16 |
Energy contribution | -21.83 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.17 |
Mean z-score | -2.38 |
Structure conservation index | 0.85 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14766000 96 - 22407834 CGCUGGCUAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCACAGUAAUAAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU .((((((...((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))....)))))).. ( -29.30) >DroSec_CAF1 12492 96 - 1 CGCUGGCAAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCACAGUAAUAAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU .(((((((..((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))...))))))).. ( -30.40) >DroSim_CAF1 8229 96 - 1 CGCUGGCUAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCACAGUAAUAAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU .((((((...((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))....)))))).. ( -29.30) >DroEre_CAF1 6980 83 - 1 -GCUGGCUAGCUGAGGGACAUUAAUAUUUAUUAACAUGUGGUGCAUGAUUAAUGCAUAGUAAUAAAAUUAGUUAAAGCCUCGAG------------ -...((((((((((.....((((.(((.((((((((((.....)))).)))))).))).))))....))))))..)))).....------------ ( -18.30) >DroYak_CAF1 9708 96 - 1 CGCUGGCUAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCAUAGUAAUGAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU .((((((...((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))....)))))).. ( -27.90) >DroAna_CAF1 7375 89 - 1 AGCUGGCUGGCCGAGAGACAUUAAUAUUUAUUAACACGCGGUGCAUGAUUAAUGCUUUAUAAUAAAAUUAGUUAAAGCUU-GGGAUCUGC------ .........((((...(...(((((....)))))..).))))(((.((((...((((((.............))))))..-..)))))))------ ( -14.32) >consensus CGCUGGCUAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCACAGUAAUAAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU .((((((...((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))....)))))).. (-21.16 = -21.83 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:05 2006