Locus 5224

Sequence ID 2L_DroMel_CAF1
Location 14,756,875 – 14,756,976
Length 101
Max. P 0.802641
window8316

overview

Window 6

Location 14,756,875 – 14,756,976
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 88.86
Mean single sequence MFE -25.54
Consensus MFE -18.46
Energy contribution -18.26
Covariance contribution -0.20
Combinations/Pair 1.11
Mean z-score -2.18
Structure conservation index 0.72
SVM decision value 0.62
SVM RNA-class probability 0.802641
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14756875 101 + 22407834
UAAUUUUAAUCAAA-CAAAAUUAAAAUGCUUGCCAAAAGCAAACCGCUGAUUGGCAUGUCUCACUUGCUGCAAAAGCAGGUUUUAGGCUUUCUGCCUCCGUC
..((((((((....-....))))))))((.((((((.(((.....)))..)))))).))...(((((((.....)))))))...((((.....))))..... ( -27.30)
>DroSec_CAF1 21044 101 + 1
AAAUUUUAAUCAAA-CAAAAUUAAAAUGCUGGCCAAAAGCAAACCGCUGAUUGGCAUGUCGCACUUGCUGCAAAAGCAGGUUUUAGGCUUUCUGCCUCCGUC
..((((((((....-....))))))))((..(((((.(((.....)))..))))).....))(((((((.....)))))))...((((.....))))..... ( -26.50)
>DroSim_CAF1 21876 101 + 1
UUAUUUUAAUCAAA-CAAAAUUAAAAUGCUUGCCAAAAGCAAACCGCUGAUUGGCAUGUCGCACUUGCUGCAAAAGCAGGUUUUAGGCUUUCUGCCUCCGUC
..((((((((....-....))))))))((.((((((.(((.....)))..))))))....))(((((((.....)))))))...((((.....))))..... ( -27.80)
>DroEre_CAF1 21565 102 + 1
UAGUUUUAAACGAACCAAAAUUAAGAUGCUGACAAAAAGCAAAACGCUGGUUGGCAUGUCGCACUUGUUGCAAAAGCAAGUCCUGGGCUUUCUGCCACCGUC
.........(((.............((((..((....(((.....))).))..))))...(.(((((((.....))))))).)..(((.....)))..))). ( -24.80)
>DroYak_CAF1 23414 101 + 1
AAGUUUUAAACAAA-CAAAAUUAUGAUGCUUUCAAAAAGCAAACAGCUGAUUGGCAUGUCGCAAUUGCUGCAAAAGCAAGUUUUGGGCUUCCUGCCACCGUC
..............-(((((((....((((((.....(((((((((((....))).))).....)))))...)))))))))))))(((.....)))...... ( -21.30)
>consensus
UAAUUUUAAUCAAA_CAAAAUUAAAAUGCUUGCCAAAAGCAAACCGCUGAUUGGCAUGUCGCACUUGCUGCAAAAGCAGGUUUUAGGCUUUCUGCCUCCGUC
.........................(((((.......(((.....)))....))))).....(((((((.....)))))))....(((.....)))...... (-18.46 = -18.26 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:04 2006