| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,755,456 – 14,755,566 |
| Length | 110 |
| Max. P | 0.819308 |
| Location | 14,755,456 – 14,755,566 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.32 |
| Mean single sequence MFE | -33.17 |
| Consensus MFE | -22.22 |
| Energy contribution | -21.78 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.819308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14755456 110 + 22407834 CAACUUACCAACUGUGUUGUGGCUAACGCCCCCGAAGC-UGAUUCUGGGGGCGUGGCAGACACUGUCUAGCU----UCUU----CUACCGCGUCAAAGACAGUAAAU-UGAAGUGCAAAA (((.((((.....(((((...((((.((((((((((..-...))).))))))))))).)))))(((((.((.----....----.....)).....))))))))).)-)).......... ( -36.20) >DroSim_CAF1 19426 116 + 1 CAACUUACCAACUGUGUUGUGGCUAACGUUCCCGAAGCUUGAUUCUGGGGGCGUGGCACACACUGUCUAGCUUUCAUCUU----CUACCGCGUCAAAGACAGUAAAUUUGAAGUGCAAAA ............((..(((((((((.((((((((((......))).))))))))))).)))(((((((.((.........----.....)).....)))))))........))..))... ( -31.94) >DroEre_CAF1 20146 107 + 1 CAACGCACCGUCUGUAUUGUGGCAAACGCCCCCGCAGC-UGGCUCUGGGGGCGUGGCAGACCCUGUCUAGCU----UCU-------ACCGCGGCAAAGACAGUAAAU-UGGAGUGCAGAA ....(((((((((((..........(((((((((.((.-...)).))))))))).)))))).((((((.(((----.(.-------...).)))..)))))).....-..).)))).... ( -42.50) >DroYak_CAF1 21919 97 + 1 ----------UCUGUAUUGUGGCUAACGCCCCC-UAGC-U--CACUGGGGGCGUGGCAGACAUCGUCUAGCU----UCUU----CCACCGCGUCAAAGACAGUAAAU-UGGAGUGCAAAA ----------..((((((((((...((((((((-.((.-.--..))))))))))(((((((...)))).)))----....----...))))(((...))).......-...))))))... ( -32.30) >DroAna_CAF1 38734 96 + 1 --GCU-----UCUCAGUUGUGGUUAAUGCUCAAGAAGU-------AGAGGGCGUGUCAGGAGUUUUCUAGUC----ACUUCAUUUGACCGCGUCAAAGGCAUCG------CAAUAGAAAA --..(-----(((..((((((((..((((((.......-------...))))))(((.(((((.........----))))).((((((...)))))))))))))------)))))))).. ( -22.90) >consensus CAACU_ACC_UCUGUGUUGUGGCUAACGCCCCCGAAGC_UG_CUCUGGGGGCGUGGCAGACACUGUCUAGCU____UCUU____CUACCGCGUCAAAGACAGUAAAU_UGAAGUGCAAAA ............((((((((((...(((((((((...........)))))))))(((((((...)))).)))...............))))(((...)))...........))))))... (-22.22 = -21.78 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:03 2006