Locus 5221

Sequence ID 2L_DroMel_CAF1
Location 14,752,605 – 14,752,702
Length 97
Max. P 0.524919
window8311

overview

Window 1

Location 14,752,605 – 14,752,702
Length 97
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 89.02
Mean single sequence MFE -25.30
Consensus MFE -18.38
Energy contribution -18.14
Covariance contribution -0.24
Combinations/Pair 1.17
Mean z-score -1.63
Structure conservation index 0.73
SVM decision value -0.02
SVM RNA-class probability 0.524919
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14752605 97 + 22407834
CCAUACCAAGCUCAUUCAAGCCAGUCUGCUGCUCAUCUUCAUUGUAGAUGACAG--------CUCCCAUUGUCCUUCGCUGACUCCUGCAGCGACAGCAGCUGCA
.........(((......)))(((.((((((.((((((.......))))))...--------.............((((((.(....)))))))))))))))).. ( -27.60)
>DroSec_CAF1 16806 97 + 1
CCAUACCGAGCUCAUUCAAGCCAGUCUGCUGCUCAUCUUCAUUGUAGAUGACAG--------UUCCCAUUGUCCUUCGCCGACUCCUGCAGCGACAGCAGCUGCA
.......(((.((....(((.((((..((((.((((((.......)))))))))--------)....))))..)))....)))))..(((((.......))))). ( -24.00)
>DroEre_CAF1 17226 105 + 1
CCAUACCAAGCUCAUUCAAGCCAGUCUGCUGCUCAUCUUCAUUGUAGAUGACAGCUCCACAGCUCCCAUUGUCCUUCGCCGACUCCUGCAGCGACAGCAGCUGCA
.........(((......))).((((.((((.((((((.......))))))))))...((((......))))........))))...(((((.......))))). ( -25.50)
>DroYak_CAF1 18907 97 + 1
CCAUACCGAGCUCAUUCAAGCCAGUCUGCUGCUCAUCUUCAUUGUAGAUGACAG--------CUCCCAUUGUCCUUCGCCGACUCCUGCAGCGACAGCAGCUGCA
.......(((.((....(((.((((..((((.((((((.......)))))))))--------)....))))..)))....)))))..(((((.......))))). ( -25.60)
>DroAna_CAF1 36260 96 + 1
CCCU-CCGUGCUCAUUCAAGCCAGCCUGCUGCUCAUCUUCAUUGUGGCUGAUGG--------CUUCCAUUGUCCUGUGACAACUCCUGCGGCGACAUCAGCUGCC
....-............((((((....((..(...........)..))...)))--------)))...(((((....))))).....(((((.......))))). ( -23.80)
>consensus
CCAUACCGAGCUCAUUCAAGCCAGUCUGCUGCUCAUCUUCAUUGUAGAUGACAG________CUCCCAUUGUCCUUCGCCGACUCCUGCAGCGACAGCAGCUGCA
.........(((......)))..((..(((((((((((.......))))))..................((((((.((........)).)).))))))))).)). (-18.38 = -18.14 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:59 2006