Locus 5220

Sequence ID 2L_DroMel_CAF1
Location 14,752,448 – 14,752,547
Length 99
Max. P 0.765026
window8310

overview

Window 0

Location 14,752,448 – 14,752,547
Length 99
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 84.59
Mean single sequence MFE -29.45
Consensus MFE -20.24
Energy contribution -20.80
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -1.90
Structure conservation index 0.69
SVM decision value 0.51
SVM RNA-class probability 0.765026
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14752448 99 - 22407834
CCGGGCAAACAAUAAGGGCUAACAUUUAUACAAGCCACCCACAUGGGCACAUGCAUGUAUC--------------UGUAUGUAGGCACAUGCGAGAGGGGUCAUACAUACAGU
....(((.........((((............)))).(((....)))....)))......(--------------(((((((((((.(...(....).)))).))))))))). ( -25.10)
>DroSec_CAF1 16633 98 - 1
CCG-GCAAACAAUAAGGGCUAACAUUUAUACAAGCCACCCACAUGUGCACAUGCAUGUAUC--------------UGUAUGUAGGCACAUGCGAGAGGGGUCAUACAUGCAGU
...-(((.........((((............))))((((.((((((((((((((......--------------)))))))..)))))))(....)))))......)))... ( -29.90)
>DroEre_CAF1 17040 99 - 1
UCGGGCAAACAAUAAGGGCUAACAUUUAUACAAGCCACCCACACUCGCACAUGCAUGUGCC--------------UGGGUGUGGGCACAUGCGAGAGGGGUCAUACAUGCAAU
....(((.........((((............))))((((.(.((((((......((((((--------------(......))))))))))))).)))))......)))... ( -32.80)
>DroYak_CAF1 18719 113 - 1
CCGGGCAAACAAUAAGGGCUAACAUUUAUACAAGCCACCCACUUGCACACAUGCAAGUACAUAUCCAUGCACAUAUGUAUGUAGGCACAUGCGAGAGGGGUCAUACGUACAAU
...(((..........((((............)))).(((.((((((....(((..((((((((........))))))))....)))..)))))).))))))........... ( -30.00)
>consensus
CCGGGCAAACAAUAAGGGCUAACAUUUAUACAAGCCACCCACAUGCGCACAUGCAUGUACC______________UGUAUGUAGGCACAUGCGAGAGGGGUCAUACAUACAAU
...(((..........((((............)))).(((((((((......)))))).................(((((((....)))))))...))))))........... (-20.24 = -20.80 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:58 2006