Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,590,552 – 1,590,652 |
Length | 100 |
Max. P | 0.614116 |
Location | 1,590,552 – 1,590,652 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 92.23 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -22.91 |
Energy contribution | -23.30 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.12 |
Mean z-score | -1.32 |
Structure conservation index | 0.88 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614116 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1590552 100 + 22407834 ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGUCUCUGGCAAACUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCAA-AUCU .....((((....((((((......))))))((((..(((.....)))...))))(((....(((((........)))))...)))....))))..-.... ( -26.10) >DroSec_CAF1 68966 100 + 1 ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGUCUCUGGCAAACUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCAA-AACU .....((((....((((((......))))))((((..(((.....)))...))))(((....(((((........)))))...)))....))))..-.... ( -26.10) >DroSim_CAF1 71361 100 + 1 ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGUCUCUGGCAAACUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCAA-AACU .....((((....((((((......))))))((((..(((.....)))...))))(((....(((((........)))))...)))....))))..-.... ( -26.10) >DroEre_CAF1 70545 100 + 1 ACAGCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGCCUCUGGUAAAAUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCGAAUGGCAA-AGCU ...(((((.....((((((......))))))((((..((((...))))...)))).....)))))....((((((.((........))))))))..-.... ( -29.00) >DroYak_CAF1 69335 100 + 1 ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGCCUCUGGUAAAAUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCCA-AACU .....((((....((((((......))))))((((..((((...))))...))))(((....(((((........)))))...)))....))))..-.... ( -25.60) >DroAna_CAF1 99564 93 + 1 ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGGGUCUC--------GCAGUAAGGUGCGUUCGACGUUACGCAAAAACCAAAAUGGCAAAAACU .....((((..((((((((......)))))((((.....))))..--------)))....(((((((........))))....)))....))))....... ( -22.60) >consensus ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGUCUCUGGCAAACUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCAA_AACU .....((((....((((((......))))))((((..((((...))))...))))(((....(((((........)))))...)))....))))....... (-22.91 = -23.30 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:16 2006