| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,751,329 – 14,751,424 |
| Length | 95 |
| Max. P | 0.794499 |
| Location | 14,751,329 – 14,751,424 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.08 |
| Mean single sequence MFE | -19.61 |
| Consensus MFE | -11.03 |
| Energy contribution | -10.70 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14751329 95 + 22407834 -UC-------------CUCAGCUCCCCCAUAUCUCUGCACUUUU-AGUACAGAACUAGGGGCGGUUCCGACGCCCACUUCACACAGAUAUCAACUAAAAUAGCUUUAUAU -..-------------...((((.....(((((((((.((....-.)).)))).....(((((.......)))))..........)))))..........))))...... ( -18.16) >DroSec_CAF1 15515 93 + 1 -UC-------------CCCAUCUCCCUCAUAUCUCUGUACUUUU-AGUACAGAACUAGGGGCGGCUCCGACGCCCACUUCA--CAGAUAUCAACUAAAAUAGCUUUAUAU -..-------------............((((((((((((....-.))))))).....(((((.......)))))......--..))))).................... ( -22.00) >DroSim_CAF1 15101 93 + 1 -UC-------------CCCAGCUCCCCCAUAAAACUGUACUUUU-AGUACAGAACUAGGGGCGGUUCCGACGCCCACUUCA--CAGAUAUCAACUAAAAUAGCUUUAUAU -..-------------...((((...........((((((....-.))))))......(((((.......)))))......--.................))))...... ( -20.90) >DroEre_CAF1 15896 93 + 1 -UC-------------CCUGGAUCUCCCAUAUUCCAGUACUUUU-AGAACUGAGCUGGGGGCGUUUCCGACGCCCACUGCA--CAAAUAUCAACUAAAAUAGCUUUAUAU -..-------------.(((((..........)))))...((((-((...(((((...(((((((...)))))))...)).--......))).))))))........... ( -20.61) >DroYak_CAF1 17634 94 + 1 -UU-------------CCCAGAUCAACCUUACCCCUGUAUUUUUAAGAACUGAACAAGGGGCGGACUCAACGCCCACUUCA--CAAAUAUCAACUGAAAUAGCUUUAUAU -..-------------..(((.(((..((((............))))...)))..((((((((.......))))).)))..--..........))).............. ( -13.80) >DroAna_CAF1 35177 100 + 1 CUCUCUGGUUCCUUGUUCCAGCUCACCC-----UCGGUACUAGU-GGGUCU--AGUGGGGGUGUGUCCGACGCCCACUUAA--CAAAUAUCAACUAAAAUAGCUUUAUAU .....((((...((((((((.((.((((-----.(.......).-))))..--)))))((((((.....))))))....))--)))..)))).................. ( -22.20) >consensus _UC_____________CCCAGCUCCCCCAUAUCUCUGUACUUUU_AGUACAGAACUAGGGGCGGUUCCGACGCCCACUUCA__CAAAUAUCAACUAAAAUAGCUUUAUAU ..................................((((.((....)).))))....(((((((.......))))).))................................ (-11.03 = -10.70 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:57 2006