Locus 5218

Sequence ID 2L_DroMel_CAF1
Location 14,747,401 – 14,747,521
Length 120
Max. P 0.927413
window8308

overview

Window 8

Location 14,747,401 – 14,747,521
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.45
Mean single sequence MFE -20.37
Consensus MFE -18.47
Energy contribution -18.47
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.91
SVM decision value 1.18
SVM RNA-class probability 0.927413
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14747401 120 + 22407834
AACUACUUUCUGCACGUCUGCAGAUAAAAUCGAUAAAUUCCUUUUCGUAAAACGAAUUAGGAAACUAAUUGACUUGGAUUUCGCUUAAAGAAUCUCACAUAAAGAAUCUCACAUAAAUCG
........((((((....)))))).....(((((...(((((.((((.....))))..)))))....)))))....(((((.......(((.(((.......))).))).....))))). ( -20.90)
>DroVir_CAF1 23733 106 + 1
AACUACUUUCUGCACGUCUGCAGAUAAAAUCGAUAAAUUCCUUUUCGCAAAACGAAUUAGGAAACUAAUUGACUUGGAUUUCGCUUAAAGAAUC--------------UCACAUAAAUCG
........((((((....))))))......((((...(((((.((((.....))))..)))))............((((((........)))))--------------).......)))) ( -18.90)
>DroSim_CAF1 11224 120 + 1
AACUACUUUCUGCACGUCUGCAGAUAAAAUCGAUAAAUUCCUUUUCGUAAAACGAAUUAGGAAACUAAUUGACUUGGAUUUCGCUUAAAGAAUCUCACAUAAAGAAUCUCACAUAAAUCG
........((((((....)))))).....(((((...(((((.((((.....))))..)))))....)))))....(((((.......(((.(((.......))).))).....))))). ( -20.90)
>DroEre_CAF1 11718 120 + 1
AACUACUUUCUGCACGUCUGCAGAUAAAAUCGAUAAAUUCCUUUUCGUAAAACGAAUUAGGAAACUAAUUGACUUGGAUUUCGCUUAAAGAAUCUCACAUAAAGAAUCUCACAUAAAUCG
........((((((....)))))).....(((((...(((((.((((.....))))..)))))....)))))....(((((.......(((.(((.......))).))).....))))). ( -20.90)
>DroYak_CAF1 12917 120 + 1
AACUACUUUCUGCACGUCUGCAGAUAAAAUCGAUAAAUUCCUUUUCGUAAAACGAAUUAGGAAACUAAUUGACUUGGAUUUCGCUUAAAGAAUCUCACAUAAAGAAUCUCACAUAAAUCG
........((((((....)))))).....(((((...(((((.((((.....))))..)))))....)))))....(((((.......(((.(((.......))).))).....))))). ( -20.90)
>DroAna_CAF1 32070 106 + 1
AACUACUUUCUGCACGUCUGCAGAUAAAAUCGAUAAAUUCCUUUUCGUAAAACGAAUUAGGAAACUAAUUGACUUGGAUUUCGCUUAAAGAAUC--------------UCACAUAAAUCG
........((((((....))))))......((((...(((((.((((.....))))..)))))............((((((........)))))--------------).......)))) ( -19.70)
>consensus
AACUACUUUCUGCACGUCUGCAGAUAAAAUCGAUAAAUUCCUUUUCGUAAAACGAAUUAGGAAACUAAUUGACUUGGAUUUCGCUUAAAGAAUCUCACAUAAAGAAUCUCACAUAAAUCG
........((((((....))))))......((((...(((((.((((.....))))..))))).............(((((........)))))......................)))) (-18.47 = -18.47 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:56 2006