Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,745,202 – 14,745,321 |
Length | 119 |
Max. P | 0.859298 |
Location | 14,745,202 – 14,745,321 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.71 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -20.98 |
Energy contribution | -21.15 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.06 |
Mean z-score | -1.77 |
Structure conservation index | 0.87 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14745202 119 - 22407834 UGGUGUGCUGAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG-CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACGCACUUUUUGA ..(((((((((.(((((((....))))))).(((......(((((((..(-((.....(((((....))))).))))))))))...))).............)))))))))......... ( -27.50) >DroVir_CAF1 20539 119 - 1 GUGUGUGUAAAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG-CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACACACUUUUUGA ((((((((....(((((((....))))))).(((......(((((((..(-((.....(((((....))))).))))))))))...)))..((((......))))))))))))....... ( -27.10) >DroPse_CAF1 25139 120 - 1 CUGUCCGUAAAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAGCCGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACACACUUUUUGA (((.(((((((.((.....)).))))))))))...(((..((((((((...((.....(((((....))))).))))))))))..)))...((((......))))............... ( -18.50) >DroYak_CAF1 10690 119 - 1 CGGUGUGCUGAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG-CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACGCACUUUUUGA ..(((((((((.(((((((....))))))).(((......(((((((..(-((.....(((((....))))).))))))))))...))).............)))))))))......... ( -27.50) >DroAna_CAF1 29916 119 - 1 CUGUGUGCAGAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG-CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACGCACUUUUUGA .(((((((....(((((((....))))))).(((......(((((((..(-((.....(((((....))))).))))))))))...)))..((((......)))))))))))........ ( -25.70) >DroPer_CAF1 24838 120 - 1 CUGUCCGUAAAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAGGCGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACACACUUUUUGA (((.(((((((.((.....)).))))))))))...(((..(((((((...(((.....(((((....))))).))))))))))..)))...((((......))))............... ( -18.90) >consensus CUGUGUGCAAAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG_CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACACACUUUUUGA ..((((((....(((((((....))))))).(((......((((((((...((.....(((((....))))).))))))))))...)))..((((......))))))))))......... (-20.98 = -21.15 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:55 2006