| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,741,798 – 14,741,905 |
| Length | 107 |
| Max. P | 0.967413 |
| Location | 14,741,798 – 14,741,905 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 71.45 |
| Mean single sequence MFE | -18.74 |
| Consensus MFE | -9.92 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14741798 107 - 22407834 --CCUGAAAGUGCCACUUGAGCAUUUUCAGAUUCUUUAUUUACCACCACUUGAGCACCCCGCCCAACGCCCACCCAAAUAAAUUUCCGGUUUGUUUU-CCACAUUUUUGA-- --.(((((((((((....).)))))))))).....................(((((..(((.........................)))..))))).-............-- ( -17.61) >DroVir_CAF1 14533 97 - 1 UGCCCGAAACUGCCACUUAAGCAGUUGCUGCUCUUUUAUUUACCA---CUUG-----------CAAUGGCCGCACAAAUAAAUUUCCGGCUCGAGAC-UCGAACUUUUGGAA ...((((((((((.......))))))((((....(((((((....---..((-----------(.......))).)))))))....))))(((....-.)))....)))).. ( -17.70) >DroSec_CAF1 6325 107 - 1 --CCUGAAAGUGCCACUUGAGCAUUUUCAGAUUCUUUAUUUACCACCACUUGAGCACUCCGCCCAACGCCCACCCAAAUAAAUUUCCGGUUUGUUUU-CCACAUCUUUAA-- --.(((((((((((....).))))))))))....(((((((........(((.((.....)).))).........))))))).....((........-))..........-- ( -17.43) >DroSim_CAF1 6100 107 - 1 --CCUGAAAGUGCCACUUGAGCAUUUUCAGAUUCUUUAUUUACCACCACUUGGGCACUCCGCCCAACGCCCACCCAAAUAAAUUUCCGGUUUGUUUU-CCACAUUUUUGA-- --.(((((((((((....).))))))))))....(((((((........((((((.....)))))).........))))))).....((........-))..........-- ( -24.33) >DroEre_CAF1 6213 108 - 1 --CCUGAAAGUGCCACUUAAGCAUUUUCAGAUUCUUUAUUUACCUUCUCUUAAGCACUCCGCCCACCACCCACUCAAAUAAAUUUCCGGCUUGUGUUCCCAUUUUUUUGA-- --.((((((((((.......))))))))))......................(((((...(((........................)))..))))).............-- ( -18.26) >DroAna_CAF1 27271 92 - 1 UGCCUGAAAAUGCCAUUUGAGCAUUUGCACCCU-UUUAUUUACUAGCACAUGCUCACUGCA----GUGACCACCCAA-----UCGCCAAUUUAUUUC-UUAAA--------- .....((((.(((....(((((((.(((.....-...........))).)))))))..)))----((((........-----)))).......))))-.....--------- ( -17.09) >consensus __CCUGAAAGUGCCACUUGAGCAUUUUCAGAUUCUUUAUUUACCACCACUUGAGCACUCCGCCCAACGCCCACCCAAAUAAAUUUCCGGUUUGUUUU_CCACAUUUUUGA__ ...((((((((((.......)))))))))).................................................................................. ( -9.92 = -10.20 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:48 2006