Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,738,976 – 14,739,070 |
Length | 94 |
Max. P | 0.551291 |
Location | 14,738,976 – 14,739,070 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 88.48 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -15.74 |
Energy contribution | -17.43 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.09 |
Mean z-score | -1.54 |
Structure conservation index | 0.71 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14738976 94 + 22407834 AGAAAUCAGCUCUGUUAAUGCAGUGCUAGAAUUUUGCUACCUCAUCGCAGACGCUUAAUCUAAUAAUCACAGCUUGGGGUAUAUAGAUUUCGAU .(((((((((.((((....)))).)))..........(((((((..((.......................)).)))))))....))))))... ( -22.80) >DroSec_CAF1 3262 94 + 1 AGAAAUCAGCGCUGUUAAUGCAGUGCCAUAAUUGUGCUACCUCAUCGCAGACGCUUAAUCUAUUAACCACAGCUUGGGGUAUAUAGAUUUCGAU .((((((.(((((((....)))))))......((((.(((((((..((.......................)).)))))))))))))))))... ( -26.10) >DroSim_CAF1 3156 94 + 1 AGAAAUCAGCGCUGUUAAUGCAGUGCCAGAAUUUUGCUACCUCAUCGCAGACGCUUAAUCUAUUAACCACAGCUUGGGGUAUAUAGAUUUCGAU .((((((.(((((((....)))))))...........(((((((..((.......................)).)))))))....))))))... ( -24.80) >DroYak_CAF1 3834 92 + 1 AGAAAUCAGCACGUUUAGU--AUUACUUAAAUUCUGCCACCUCAUCGCAGACGCCUAAUCUAAUAACCACAGCGUGGGGUAUAUAUAUUUUGAU ....(((((((.((((((.--.....))))))..))).((((((.(((.......................)))))))))..........)))) ( -14.40) >consensus AGAAAUCAGCGCUGUUAAUGCAGUGCCAGAAUUUUGCUACCUCAUCGCAGACGCUUAAUCUAAUAACCACAGCUUGGGGUAUAUAGAUUUCGAU .((((((.(((((((....)))))))...........(((((((..((.......................)).)))))))....))))))... (-15.74 = -17.43 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:47 2006