Locus 5211

Sequence ID 2L_DroMel_CAF1
Location 14,737,852 – 14,737,957
Length 105
Max. P 0.516155
window8297

overview

Window 7

Location 14,737,852 – 14,737,957
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 73.85
Mean single sequence MFE -19.47
Consensus MFE -10.02
Energy contribution -12.10
Covariance contribution 2.08
Combinations/Pair 1.06
Mean z-score -1.66
Structure conservation index 0.51
SVM decision value -0.03
SVM RNA-class probability 0.516155
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14737852 105 + 22407834
AAAUCAAGUACAAUUAACCCAACAAAAAUACGAAAAAAAUUUCCAGACGUCUGGGAAAUUAAUAUUUGAGCACUGUAUCAAUGCCUAUGCUCAACGGGGGGAACC
.................(((..(................(((((((....)))))))........(((((((..(((....)))...))))))).)..))).... ( -23.90)
>DroSec_CAF1 2017 83 + 1
---------------------ACAAAAAUACCAAA-AAAUUUCCAUACGUCUGGGAAUUUAAUGUUUGAGCACUGUUUCAAUGCCUAUGCUCCACGGGGGGAACC
---------------------.........((...-(((((((((......)))))))))...((..(((((..((......))...))))).))))((....)) ( -17.30)
>DroSim_CAF1 2079 104 + 1
AAAUCAAGUACAAUUAACCCAACAAAAAUACCACA-AAAUUUCCAGACGUCUGGGAAUUUAAUGUUUGAGCACUGUUUCAAUGCCUAUGCUCCACGGGGGGAACC
.................(((..(............-((((((((((....))))))))))...((..(((((..((......))...))))).)))..))).... ( -24.10)
>DroEre_CAF1 2266 85 + 1
AAAUCAAAUACAAUGAACCCAACAAAAACACCAGA-AAAUUUCCAGACGUCUGGGUAUUCAAUG-------------------UCUAUGCUCAAGAAGGGCAACC
.........(((.((((((((((............-............)).)))))..))).))-------------------)...(((((.....)))))... ( -12.96)
>DroYak_CAF1 2029 104 + 1
AAUUCAAGUACAAAUAACACAACAAAAAUACCAGA-UAAUUUCCAGACGUCUGGGGUUUCAAUGUUUGAGCACUGUUUCUACGUCUAUGCUCAAGAAGGGCAACC
..(((................(((.(((..(((((-(...........))))))..)))...)))(((((((..(.........)..))))))))))((....)) ( -19.10)
>consensus
AAAUCAAGUACAAUUAACCCAACAAAAAUACCAAA_AAAUUUCCAGACGUCUGGGAAUUUAAUGUUUGAGCACUGUUUCAAUGCCUAUGCUCAACGGGGGGAACC
....................................((((((((((....)))))))))).......(((((...............))))).....((....)) (-10.02 = -12.10 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:46 2006