Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,729,947 – 14,730,051 |
Length | 104 |
Max. P | 0.982514 |
Location | 14,729,947 – 14,730,051 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 95.77 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -24.36 |
Energy contribution | -24.24 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.67 |
Structure conservation index | 0.92 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14729947 104 + 22407834 CUCCAGAAAUGUGCCAUCCAAUAAGGACAUUAAUGGGGUUCCGCUGUUUUCCAUGAUCAAGACUAGCGACAUCGAUAUGGUCAUGAAGUACAGGAACAUAUCAU (((((..(((((.((.........)))))))..)))))...(((((((((........))))).)))).....((((((.((.((.....)).)).)))))).. ( -26.30) >DroSec_CAF1 86792 104 + 1 CUCCAGAAAUGUGCCAUCCAAUAAGGACAUUAAUGGGGUUCCGUGGUUUUCCAUGAUCAACACUAGCGAUAUCGAUAUGGUCAUGAAGUACAGGAACAUAUCAU .((((..(((((.((.........)))))))..))))(((((.((..((((.(((((((.......((....))...)))))))))))..)))))))....... ( -26.80) >DroSim_CAF1 87465 104 + 1 CUCCAGAAAUGUGCCAUCCAAUAAGGACAUUAAUGGGGUUCCAUUGUUUUCCAUGAUCAACACUAGCGAUAUCGAUAUGGUCAUGAAGUACAGGAACAUAUCAU .((((..(((((.((.........)))))))..))))(((((..(((.((.((((((((.......((....))...)))))))).)).))))))))....... ( -25.90) >DroEre_CAF1 89884 104 + 1 GUCCAGAAAUGUGCCAUCCAAUAAGGACAUUAAUGGGGUUCCGUUGUUUUCCAUUAUCAACACUAGUGAUAUCGAUAUGGUCAUGAAGUACAGGAACAUAUCAU .((((..(((((.((.........)))))))..))))(((((((((...........))))(((.(((((.........)))))..)))...)))))....... ( -22.90) >DroYak_CAF1 86496 104 + 1 CUCCAGAAAUGUGCCAUCCAAUAGGGACAUUAAUGGGGUUCCGUUGUUUUCCAUGAUCAACACCAGCGAUAUCGAUAUGGUCAUGAGGUACAGGAACAUAUCAU .((((..(((((.((........)).)))))..))))(((((..(((.(..((((((((.......((....))...))))))))..).))))))))....... ( -30.60) >consensus CUCCAGAAAUGUGCCAUCCAAUAAGGACAUUAAUGGGGUUCCGUUGUUUUCCAUGAUCAACACUAGCGAUAUCGAUAUGGUCAUGAAGUACAGGAACAUAUCAU .((((..(((((.((.........)))))))..))))(((((...((.((.((((((((.......((....))...)))))))).)).)).)))))....... (-24.36 = -24.24 + -0.12)
Location | 14,729,947 – 14,730,051 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 95.77 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -22.84 |
Energy contribution | -22.88 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.14 |
Structure conservation index | 0.91 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14729947 104 - 22407834 AUGAUAUGUUCCUGUACUUCAUGACCAUAUCGAUGUCGCUAGUCUUGAUCAUGGAAAACAGCGGAACCCCAUUAAUGUCCUUAUUGGAUGGCACAUUUCUGGAG .......((((((((..(((((((.((....(((.......))).)).)))))))..)))..))))).(((..(((((((.........)).)))))..))).. ( -23.90) >DroSec_CAF1 86792 104 - 1 AUGAUAUGUUCCUGUACUUCAUGACCAUAUCGAUAUCGCUAGUGUUGAUCAUGGAAAACCACGGAACCCCAUUAAUGUCCUUAUUGGAUGGCACAUUUCUGGAG .......(((((((...(((((((.....(((((((.....))))))))))))))....)).))))).(((..(((((((.........)).)))))..))).. ( -24.60) >DroSim_CAF1 87465 104 - 1 AUGAUAUGUUCCUGUACUUCAUGACCAUAUCGAUAUCGCUAGUGUUGAUCAUGGAAAACAAUGGAACCCCAUUAAUGUCCUUAUUGGAUGGCACAUUUCUGGAG .......((((((((..(((((((.....(((((((.....))))))))))))))..)))..))))).(((..(((((((.........)).)))))..))).. ( -26.00) >DroEre_CAF1 89884 104 - 1 AUGAUAUGUUCCUGUACUUCAUGACCAUAUCGAUAUCACUAGUGUUGAUAAUGGAAAACAACGGAACCCCAUUAAUGUCCUUAUUGGAUGGCACAUUUCUGGAC .......((((((((..(((((.....(((((((((.....))))))))))))))..)))..))))).(((..(((((((.........)).)))))..))).. ( -23.90) >DroYak_CAF1 86496 104 - 1 AUGAUAUGUUCCUGUACCUCAUGACCAUAUCGAUAUCGCUGGUGUUGAUCAUGGAAAACAACGGAACCCCAUUAAUGUCCCUAUUGGAUGGCACAUUUCUGGAG .......((((((((...((((((.....(((((((.....)))))))))))))...)))..))))).(((..(((((.((........)).)))))..))).. ( -26.50) >consensus AUGAUAUGUUCCUGUACUUCAUGACCAUAUCGAUAUCGCUAGUGUUGAUCAUGGAAAACAACGGAACCCCAUUAAUGUCCUUAUUGGAUGGCACAUUUCUGGAG .......(((((((.....))...((((((((((((.....)))))))).))))........))))).(((..(((((((.........)).)))))..))).. (-22.84 = -22.88 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:43 2006